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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATCGAATAAAGATAATTCCTATGGGTAGCTACCCTCGTATCACAGACACCAATAACAGTACCTACGAGCTgtaagtacgcttcatggttctacatttgtagtcatttgtgtctttgtgatttttgactttatttatagaatttgatgctggctgaagttgagcctaaatt...

Basic information

species Glycine max
transcript GLYMA04G26840.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G26840.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv15s0046g00950.t01 (Vitis vinifera), 5'ss of exon 8
ATATCGAATAAAGATAATTCCTATGGGTAGCTACCCTCGTATCACAGACACCAATAACAGTACCTACGAGCTgtaagtacgcttcatggttctacatttgtagtcatttgtgtctttgtgatttttgactttatttatagaatttgatgctggctgaagttgagcctaaatt-----
||| |||||||| |||||||||||||| || |||||||| || || |||| ||| |||||||| || || |||||||||     | || | |     || ||      | ||||||| | | |     | || |  |||  ||        | ||| | | |||   ||        
ATACCGAATAAAAATAATTCCTATGGGAAGTTACCCTCGGATTACGGACAGCAACAACAGTACTTATGAACTgtaagtata--gcctgctcccttggttctaactggatttgtctttttaaat---agcattttaaataatatgcagcttagactgtaatggagtgcaagaagccta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15813717|gb|BI785992.1|BI785992
EST:     ATGGGTAGCTACCCTCGTATCACAGACACCAATAACAGTACCTACGAGCT                         GTTTGGTCCTGTCAACTTGTTCTGGAGTACTCGCTATGACAAAGCAATGAC
genomic: ATGGGTAGCTACCCTCGTATCACAGACACCAATAACAGTACCTACGAGCTgtaagtacgc ... tggttttcagGTTTGGTCCTGTCAACTTGTTCTGGAGTACTCGCTATGACAAAGCAATGAC
EST: gi|58023609|gb|CX710350.1|CX710350
EST:     ATGGGTAGCTACCCTCGTATCACAGACACCAATAACAGTACCTACGAGCT                         GTTTGGTCCTGTCAACTTGTTCTGGAGTACTCGCTATGACAAAGCAATGAC
genomic: ATGGGTAGCTACCCTCGTATCACAGACACCAATAACAGTACCTACGAGCTgtaagtacgc ... tggttttcagGTTTGGTCCTGTCAACTTGTTCTGGAGTACTCGCTATGACAAAGCAATGAC
EST: gi|22931617|gb|BU548756.1|BU548756
EST:     ATGGGTAGCTACCCTCGTATCACAGACACCAATAACAGTANNNACGAGCT                         GTTTGGTCCTGTCAACTTGTTCTGGAGTACTCGCTATGACAAAGCAATGAC
genomic: ATGGGTAGCTACCCTCGTATCACAGACACCAATAACAGTACCTACGAGCTgtaagtacgc ... tggttttcagGTTTGGTCCTGTCAACTTGTTCTGGAGTACTCGCTATGACAAAGCAATGAC
EST: gi|192308787|gb|FG999798.1|FG999798
EST:     ACCTACGAGCT                         GTTTGGTCCTGTCAACTTGTTCTGGAGTACTCGCTATGACAAAGCAATGAC
genomic: ACCTACGAGCTgtaagtacgc ... tggttttcagGTTTGGTCCTGTCAACTTGTTCTGGAGTACTCGCTATGACAAAGCAATGAC