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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCCTTTCGAGTATAATGATTCATGCAACTCGACCATTTGTTGTGAATGAGCGGATTCAAACAAAAATTAAAGGATATGAGGTTACTGGTAAAGTTGAGgtttgtatctatcacctaacttactgaaaaggttgtttaggaggaacagaaaacataatgttattcagtgtaagtgatttttattataagtgatattttccccaagtatatatctttaaaaattttcattgtaatcaaattttatattttgtatag

Basic information

species Glycine max
transcript GLYMA04G10050.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G10050.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv18s0001g07500.t01 (Vitis vinifera), 5'ss of exon 10
CTTCCTTTCGAGTATAATGATTCATGCAACTCGACCATTTGTTGTGAATGAGCGGATTCAAACAAAAATTAAAGGATATGAGGTTACTGGTAAAGTTGAGgtttgtatctatcacctaacttactgaaaaggttgtttaggaggaacagaaaacataatgttattcagtgtaagtgattt--ttattataagtgatattttccccaagtatatatctttaaaaattttcattgtaatcaaattttatattttgtatag
 |||||||| ||  ||||||| |||||||| ||||||||||||||||| ||  ||||||||||||| ||| |||| ||||| ||| |||| |  |||||||||||||| ||     |   ||    ||||  ||    |||    | ||  || | || |     |  |  |     | |  |||  |||||||| | ||  |                                                       
TTTCCTTTCAAGCGTAATGATCCATGCAACACGACCATTTGTTGTGAACGAATGGATTCAAACAAAGATTGAAGGTTATGAAGTTTCTGGGACTGTTGAGgtttgtatttactcttt---ttcacaaaaattttagaaagggattatagctaagagaaagaaggcctttccagtgcctctacttaacataagtgagacttagc-------------------------------------------------------

upper sequence: GLYMA04G10050.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv18s0001g07520.t01 (Vitis vinifera), 5'ss of exon 7
CTTCCTTTCGAGTATAATGATTCATGCAACTCGACCATTTGTTGTGAATGAGCGGATTCAAACAAAAATTAAAGGATATGAGGTTACTGGTAAAGTTGAGgtttgtatctatcacctaactta------ctgaaaaggttgtttaggaggaacagaaaacataatgttattcagtgtaagtgatttttattataagtgatattttccccaagtatatatctttaaaaattttcattgtaatcaaattttatattttgtatag
 |||||||| ||| ||||||| |||||||| |||||||||| ||||||||| |||||||||||||| |||||||  | ||| ||| |||||| |||||||||||||||  |     |  |  |       |  ||||||  | |||     | | | ||        | | || ||    ||    |||  |||||||| |||  |                                                        
TTTCCTTTCAAGTGTAATGATCCATGCAACACGACCATTTGCTGTGAATGAACGGATTCAAACAAAGATTAAAGATTCTGAAGTTTCTGGTACAGTTGAGgtttgtattcactcttttccacagagattttagaaaggtaatatagctaagagaaagaaggc----ctttccactgcctctg---cttaacataagtgagattggca-------------------------------------------------------