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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGTTAGACGGCGGGGTCTGAAAGTAGCAATTGCTGGAATTCCTAAAACCATAGACAATGACATCCCGgtatgcttgttcacaatgtcatatttttgtttctccctggaactctaatcttatcattaaaatatatctgaagtgttagttctctatgaggaaacttcatcatgttcggattgtcttctttttctttag

Basic information

species Glycine max
transcript GLYMA04G09180.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208050934|gb|GD848075.1|GD848075
EST:     TGAAAGTAGCAATTGCTGGAATTCCTAAAACCATAGACAATGACATCCCG                         GTTATTGACAAATCTTTTGGTTTTGATACTGCGGTTGAGGAGGCTCAACGT
genomic: TGAAAGTAGCAATTGCTGGAATTCCTAAAACCATAGACAATGACATCCCGgtatgcttgt ... ttttctttagGTTATTGACAAATCTTTTGGTTTTGATACTGCGGTTGAGGAGGCTCAACGT
EST: gi|207691840|gb|GD674815.1|GD674815
EST:     TGAAAGTAGCAATTGCTGGAATTCCTAAAACCATAGACAATGACATCCCG                         GTTATTGACAAATCTTTTGGTTTTGATACTGCGGTTGAGGAGGCTCAACGT
genomic: TGAAAGTAGCAATTGCTGGAATTCCTAAAACCATAGACAATGACATCCCGgtatgcttgt ... ttttctttagGTTATTGACAAATCTTTTGGTTTTGATACTGCGGTTGAGGAGGCTCAACGT
EST: gi|208283184|gb|GE079014.1|GE079014
EST:     TGAAAGTAGCAATTGCTGGAATTCCTAAAACCATAGACAATGACATCCCG                         GTTATTGACAAATCTTTTGGTTTTGATACTGCGGTTGAGGAGGCTCAACGT
genomic: TGAAAGTAGCAATTGCTGGAATTCCTAAAACCATAGACAATGACATCCCGgtatgcttgt ... ttttctttagGTTATTGACAAATCTTTTGGTTTTGATACTGCGGTTGAGGAGGCTCAACGT
EST: gi|207818086|gb|GD793099.1|GD793099
EST:     TGAAAGTAGCAATTGCTGGAATTCCTAAAACCATAGACAATGACATCCCG                         GTTATCGACAAATCTTTTGGTTTTGATACTGCGGTTGAGGAGGCTCAACGT
genomic: TGAAAGTAGCAATTGCTGGAATTCCTAAAACCATAGACAATGACATCCCGgtatgcttgt ... ttttctttagGTTATTGACAAATCTTTTGGTTTTGATACTGCGGTTGAGGAGGCTCAACGT
EST: gi|208096062|gb|GD895032.1|GD895032
EST:     GAAAGTTAGCAATTGCTGGAATTCCTAAAACCATAGACAATGACATCCCG                         GTTATTGACAAATCTTTTGGTTTTTGATACTGCGGTTGAGGAGGCTCAACG
genomic: GAAAG-TAGCAATTGCTGGAATTCCTAAAACCATAGACAATGACATCCCGgtatgcttgt ... ttttctttagGTTATTGACAAATCTTTTGG-TTTTGATACTGCGGTTGAGGAGGCTCAACG
EST: gi|208127546|gb|GD924830.1|GD924830
EST:     TGAAAGTAGCAATTGCTGGAATTCCTAAAACCATAGACAATGACATCCCG                         GTTATTGACAAATCTTTTGGTTTTGATACTGCGGTTGAGGAGGCTCAACGT
genomic: TGAAAGTAGCAATTGCTGGAATTCCTAAAACCATAGACAATGACATCCCGgtatgcttgt ... ttttctttagGTTATTGACAAATCTTTTGGTTTTGATACTGCGGTTGAGGAGGCTCAACGT
EST: gi|208203618|gb|GD996314.1|GD996314
EST:     TGAAAGTAGCAATTGCTGGAATTCCTAAAACCATAGACAATGACATCCCG                         GTTATTGACAAATCTTTTGGTTTTGATACTGCGGTTGAGGAGGCTCAACGT
genomic: TGAAAGTAGCAATTGCTGGAATTCCTAAAACCATAGACAATGACATCCCGgtatgcttgt ... ttttctttagGTTATTGACAAATCTTTTGGTTTTGATACTGCGGTTGAGGAGGCTCAACGT
EST: gi|193622987|gb|FK572461.1|FK572461
EST:     TGAAAGTAGCAATTGCTGGAATTCCTAAAACCATAGACAATGACATCCCG                         GTTATTGACAAATCTTTTGGTTTTGATACTGCGGTTGAGGAGGCTCAACGT
genomic: TGAAAGTAGCAATTGCTGGAATTCCTAAAACCATAGACAATGACATCCCGgtatgcttgt ... ttttctttagGTTATTGACAAATCTTTTGGTTTTGATACTGCGGTTGAGGAGGCTCAACGT
EST: gi|208063255|gb|GD865413.1|GD865413
EST:     TGAAAGTAGCAATTGCTGGAATTCCTAAAACCATAGACAATGACATCCCG                         GTTATTGACAAATCTTTTGGTTTTGATACTGCGGTTGAGGAGGCTCAACGT
genomic: TGAAAGTAGCAATTGCTGGAATTCCTAAAACCATAGACAATGACATCCCGgtatgcttgt ... ttttctttagGTTATTGACAAATCTTTTGGTTTTGATACTGCGGTTGAGGAGGCTCAACGT
EST: gi|208101075|gb|GD899512.1|GD899512
EST:     TGAAAGTAGCAATTGCTGGAATTCCTAAAACCATAGACAATGACATCCCG                         GTTATTGACAAATCTTTTGGTTTTGTATACTGCGGTTGAGGAGGC
genomic: TGAAAGTAGCAATTGCTGGAATTCCTAAAACCATAGACAATGACATCCCGgtatgcttgt ... ttttctttagGTTATTGACAAATCTTTTGGTTTTG-ATACTGCGGTTGAGGAGGC
EST: gi|208083027|gb|GD882209.1|GD882209
EST:     TGAAAGTAGCAATTGCTGGAATTCCTAAAACCATAGACAATGACATCCCG                         GTTATTGACAAATCTTTTGGTTTTGATACTGCGGTTGAGGAGGCTCAACGT
genomic: TGAAAGTAGCAATTGCTGGAATTCCTAAAACCATAGACAATGACATCCCGgtatgcttgt ... ttttctttagGTTATTGACAAATCTTTTGGTTTTGATACTGCGGTTGAGGAGGCTCAACGT
EST: gi|254339206|gb|GR847923.1|GR847923
EST:     TGAAAGTAGCAATTGCTGGAATTCCTAAAACCATAGACAATGACATCCCG                         GTTATTGACAA-TCTTTTGGTTTTGATACTGCGGTTGAG-AGGCTCAACGT
genomic: TGAAAGTAGCAATTGCTGGAATTCCTAAAACCATAGACAATGACATCCCGgtatgcttgt ... ttttctttagGTTATTGACAAATCTTTTGGTTTTGATACTGCGGTTGAGGAGGCTCAACGT
EST: gi|298176235|gb|HO015640.1|HO015640
EST:     TGAAAGTAGCAATTGCTGGAATTCCTAAAACCATAGACAATGACATCCCG                         GTTATTGACAAATCTTTTGGTTTTGATACTGCGGTTGAGGAGGCTCAACGT
genomic: TGAAAGTAGCAATTGCTGGAATTCCTAAAACCATAGACAATGACATCCCGgtatgcttgt ... ttttctttagGTTATTGACAAATCTTTTGGTTTTGATACTGCGGTTGAGGAGGCTCAACGT
EST: gi|193379331|gb|FK344777.1|FK344777
EST:     TGAAAGTAGCAATTGCTGGAATTCCTAAAACCATAGACAATGACATCCCG                         GTTATTGACAAATCTTTTGGTTTTGATACTGCGGTTGAGGAGGCTCAACGT
genomic: TGAAAGTAGCAATTGCTGGAATTCCTAAAACCATAGACAATGACATCCCGgtatgcttgt ... ttttctttagGTTATTGACAAATCTTTTGGTTTTGATACTGCGGTTGAGGAGGCTCAACGT
EST: gi|208141534|gb|GD939082.1|GD939082
EST:     TGAAAGTAGCAATTGCTGGAATTCCTAAAACCATAGACAATGACATCCCG                         GTTATTGTCAAATCTTTTGGTTTTGATACTGCGGTTGAGGAGGCTCAACGT
genomic: TGAAAGTAGCAATTGCTGGAATTCCTAAAACCATAGACAATGACATCCCGgtatgcttgt ... ttttctttagGTTATTGACAAATCTTTTGGTTTTGATACTGCGGTTGAGGAGGCTCAACGT
EST: gi|208273099|gb|GE072737.1|GE072737
EST:     TGAAAGTAGCAATTGCTGGAATTCCTAAAACCATAGACAATGACATCCCG                         GTTATTGACAAATCTTTTGGTTTTGATACTGCGGTTGAGGAGGCTCAACGT
genomic: TGAAAGTAGCAATTGCTGGAATTCCTAAAACCATAGACAATGACATCCCGgtatgcttgt ... ttttctttagGTTATTGACAAATCTTTTGGTTTTGATACTGCGGTTGAGGAGGCTCAACGT
EST: gi|193628847|gb|FK577683.1|FK577683
EST:     TGAAAGTAGCAATTGCTGGAATTCCTAAAACCATAGACAATGACATCCCG                         GTTATTGACAAATCTTTTGGTTTTGATACTGCGGTTGAGGAGGCTCAACGT
genomic: TGAAAGTAGCAATTGCTGGAATTCCTAAAACCATAGACAATGACATCCCGgtatgcttgt ... ttttctttagGTTATTGACAAATCTTTTGGTTTTGATACTGCGGTTGAGGAGGCTCAACGT
EST: gi|193300935|gb|FK267346.1|FK267346
EST:     AAAGTAGCAATTGCTTTGGAATTCCTAAAACCATAGACAATGACATCCCG                         GTTATTGACAAATCTTTTGGTTTTGATACTGCGGTTGAGGAGGCTCAACGT
genomic: AAAGTAGCAATTGC--TGGAATTCCTAAAACCATAGACAATGACATCCCGgtatgcttgt ... ttttctttagGTTATTGACAAATCTTTTGGTTTTGATACTGCGGTTGAGGAGGCTCAACGT
EST: gi|207802354|gb|GD775586.1|GD775586
EST:     TGAAAGTAGCAATTGCTGGAATTCCTAAAACCATAGACAATGACATCCCG                         GTTATTGACAAATCTTTTGGTTTTGATACTGCGGTTGAGGAGGCTCAACGT
genomic: TGAAAGTAGCAATTGCTGGAATTCCTAAAACCATAGACAATGACATCCCGgtatgcttgt ... ttttctttagGTTATTGACAAATCTTTTGGTTTTGATACTGCGGTTGAGGAGGCTCAACGT
EST: gi|208069904|gb|GD870483.1|GD870483
EST:     AAAGTTAGTCAATTGCTGGAATTCCTAAAACCATAGACAATGACATCCCG                         GTTATTGACAAATCTTTTGGTTTTGATACTGCGGTTGAGGAGGCTCAACGT
genomic: AAAG-TAG-CAATTGCTGGAATTCCTAAAACCATAGACAATGACATCCCGgtatgcttgt ... ttttctttagGTTATTGACAAATCTTTTGGTTTTGATACTGCGGTTGAGGAGGCTCAACGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAGTTAGACGGCGGGGTCTGAAAGTAGCAATTGCTGGAATTCCTAAAACCATAGACAATGACATCCCGgtatgcttgttcacaatgtcatatttttgtttctccctggaactctaatcttatcattaaaatatatctgaagtgttagttctctatgaggaaacttcatcatgttcggattgtcttctttttctttag

- - - - - - - - - - - - - - - -  GCTGGA