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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGGTCTATTTGTGTATGACATTTTCTGGGTTTTCTTCACCCCAGTGATGGTCAGCGTTGCAAAATCATTTGATGCTCCAATAAAGgttagtttttttgctaatgaaatggagatttctgtttgtctttgtgtgaattttaattgtgtacttactatgatatcagataaaaaaatgtaataaatctattcctaatattgtcattcaaattattttgcag

Basic information

species Glycine max
transcript GLYMA04G08510.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G08510.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os02g02530.3 (Oryza sativa), 5'ss of exon 7
GCTGGTCTATTTGTGTATGACATTTTCTGGGTTTTCTTCACCCCAGTGATGGTCAGCGTTGCAAAATCATTTGATGCTCCAATAAAGgttagtttttttgctaatgaaatggagatttctgtttgtctttgtgtgaattttaattgtgtacttactatgatatcagataaaaaaatgtaataaatctattcctaatattgtcattcaaattattttgcag
||||| || ||| | ||||| |||||||||||||||||||| || || |||||||| |||||||||||||||||||| || |||||||||||| || ||  |||       | |||||    |     |||| |  ||   || ||| |  ||  | | | |      ||||||   ||||     ||| ||   | || |   |               
GCTGGCCTCTTTTTCTATGATATTTTCTGGGTTTTCTTCACTCCTGTTATGGTCAGTGTTGCAAAATCATTTGATGCACCGATAAAGgttagtgttctttataa-------gtgattttgactc----ttgttttgatacaaaatgtctttttctttttaca------aaaaaaggctaatctggttatccccttttttctgcatag-------------

upper sequence: GLYMA04G08510.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os05g36070.2 (Oryza sativa), 5'ss of exon 8
GCTGGTCTATTTGTGTATGACATTTTCTGGGTTTTCTTCACCCCAGTGATGGTCAGCGTTGCAAAATCATTTGATGCTCCAATAAAGgttagtttttttgctaatgaaatggagatttctgtttgtctttgtgtgaattttaattgtgtacttactatgatatcagataaaaaaatgtaataaatctattcctaatattgtcattcaaattattttgcag
   || || ||| | ||||| ||||||||||| |||||||| ||||| |||||||| ||||| || ||||||||||||||||||||||| ||| ||  |              ||||||         ||||      |  ||| |   | | | |   ||| |  || |||||||     |  | |        |||| || |     |          
AGCGGACTCTTTTTCTATGATATTTTCTGGGTCTTCTTCACTCCAGTTATGGTCAGTGTTGCCAAGTCATTTGATGCTCCAATAAAGgtaagtattcctt-------------gatttc-----actcttgt------tgcaatagc-cattcatttctatacctaatcaaaaaatacgtaaggtttccagtagttattttcgtctgtttct--------

upper sequence: GLYMA04G08510.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G150251_T01 (Zea mays), 5'ss of exon 8
GCTGGTCTATTTGTGTATGACATTTTCTGGGTTTTCTTCACCCCAGTGATGGTCAGCGTTGCAAAATCATTTGATGCTCCAATAAAGgttagtttttttgctaatgaaatggagatttctgtttgtctttgtgtgaattttaattgtgtacttactatgatatcagataaaaaaatgtaataaatctattcctaatattgtcattcaaattattttgcag
| ||| || ||||||||||||||||||||||| |||||||| ||||| |||||||| || || ||||| ||||||||||| |||||||| ||   | || |  |   ||      ||| |   |  | ||||  |    | | ||   |  || |  |  | |||  |  |    |  |    ||||     |  | | || ||  | |           
GGTGGACTTTTTGTGTATGACATTTTCTGGGTGTTCTTCACTCCAGTTATGGTCAGTGTGGCTAAATCTTTTGATGCTCCTATAAAGgtcagcactctttcatactgaacctttttttgttaataccattgtcagtcactcagttagttggttccatttttctcatcttgatgctt-cagctgatctggctttgtt-tggttatgtacag----------

upper sequence: GLYMA04G08510.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G044348_T04 (Zea mays), 5'ss of exon 8
GCTGGTCTATTTGTGTATGACATTTTCTGGGTTTTCTTCACCCCAGTGATGGTCAGCGTTGCAAAATCATTTGATGCTCCAATAAAGgttagt--ttttttgctaatgaaatggagatttctgtttgtctttgtgtgaattttaattgtgtacttactatgatatcagataaaaaaatgtaataaatctattcctaatattgtcattcaaattattttgcag
| ||| || ||||||||||||||||||||||| |||||||| ||||| |||||||| || || ||||| || |||||||||||||||||  ||   | ||| ||| |||| | |   | | ||||  |     | | | ||       | | |||    |||| ||   |       |    || |                                    
GGTGGACTTTTTGTGTATGACATTTTCTGGGTGTTCTTCACTCCAGTTATGGTCAGTGTGGCTAAATCTTTCGATGCTCCAATAAAGgtcggtggctctttcctactgaacttgg--tctttgttaataccattttcagttagttccatatgcttcagctgatctcgctttgcttggttatgtacag-----------------------------------

upper sequence: GLYMA04G08510.1 (Glycine max), 5'ss of exon 8
lower sequence: AT2G03120.1 (Arabidopsis thaliana), 5'ss of exon 7
GCTGGTCTATTTGTGTATGACATTTTCTGGGTTTTCTTCACCCCAGTGATGGTCAGCGTTGCAAAATCATTTGATGCTCCAATAAAGgttagtttttttgctaatgaaatggagatttctgtttgtctttgtgtgaattttaattgtgtacttactatgatatcagataaaaaaat-gtaataaatctattcctaatattgtcattcaaattattttgcag
|| || |||||| | ||||| || |||||||||||||| || ||||| ||||| || ||||| ||||| || ||||||||||| |||||||||     |||     || |  | |                  |  ||| | ||| ||| |||| |    | |    |||    || || | | || | || |                            
GCAGGACTATTTTTCTATGATATCTTCTGGGTTTTCTTTACTCCAGTTATGGTTAGTGTTGCCAAATCCTTCGATGCTCCAATTAAGgttagtaaaaatgcctcaaaagtacacaccata--------ccaaattgattctgatt-tgttcttagtcaatttttcagtaatctcattgttacatatttctttcag--------------------------

upper sequence: GLYMA04G08510.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv06s0009g03520.t01 (Vitis vinifera), 5'ss of exon 8
GCTGGTCTATTTGTGTATGACATTTTCTGGGTTTTCTTCACCCCAGTGATGGTCAGCGTTGCAAAATCATTTGATGCTCCAATAAAGgttagtttttttgctaa--tgaaatggagatttctgtttgtctttgtgtgaattttaattgtgtacttactatgatatcagataaaaaaatgtaataaatct----attcctaatattgtca---ttcaaattattttgcag
|| || || ||||| ||||| ||||||||||| |||||||| |||||||||||||| |||||||| || || |||||||| || ||||| |||| |   | | |  ||| ||    ||  |||  | |  | || |    || ||||   | |   || |  ||    || |  || | ||||  |  |    ||||  ||| |  | |   ||||| |  ||||||||
GCAGGACTTTTTGTTTATGATATTTTCTGGGTCTTCTTCACTCCAGTGATGGTCAGTGTTGCAAAGTCCTTCGATGCTCCTATTAAGgtcagttatccaggtcaactgagatattaatc-ctggatattctggtttttggttcaatttatttcgctctgttgtaattaatcattaagtttaatttactttattattctaaatgtaataacagttcaattctttttgcag

upper sequence: GLYMA04G08510.1 (Glycine max), 5'ss of exon 8
lower sequence: EFJ18240 (Selaginella moellendorffii), 5'ss of exon 7
GCTGGTCTATTTGTGTATGACATTTTCTGGGTTTTCTTCACCCCAGTGATGGTCAGCGTTGCAAAATCATTTGATGCTCCAATAAAGgttagtttttttgctaatgaaatggagatttctgtttgtctttgtgtgaattttaattgtgtacttactatgatatcagataaaaaaatgtaataaatctattcctaatattgtcattcaaattattttgcag
|| || ||||| || |||||||| |||||||| |||||||| || |||||||||| |||||| || || ||||||||||| || |||||| | | | |    | || |||| |   ||||  |  ||  |   || |                                                                                   
GCCGGGCTATTCGTATATGACATCTTCTGGGTATTCTTCACTCCTGTGATGGTCACCGTTGCGAAGTCCTTTGATGCTCCCATCAAGgtttgctctctc---agtgcaatgcatccttct-ctaatccctccatgcag----------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207703563|gb|GD686545.1|GD686545
EST:     TCACCCCAGTGATGGTCAGCGTTGCAAAATCATTTGATGCTCCAATAAAG                         CTTTTGTTCCCCACAGCAGATTCAGCAAGGCCATTTTCAATGCTTGG
genomic: TCACCCCAGTGATGGTCAGCGTTGCAAAATCATTTGATGCTCCAATAAAGgttagttttt ... tattttgcagCTTTTGTTCCCCACAGCAGATTCAGCAAGGCCATTTTCAATGCTTGG
EST: gi|207686354|gb|GD668720.1|GD668720
EST:     GCAAAATCATTTGATGCTCCAATAAAG                         CTTTTGTTCCCCACAGCAGATTCAGCAAGGCCATTTTCAATGCTTGGCCTT
genomic: GCAAAATCATTTGATGCTCCAATAAAGgttagttttt ... tattttgcagCTTTTGTTCCCCACAGCAGATTCAGCAAGGCCATTTTCAATGCTTGGCCTT
EST: gi|120494250|gb|EH222417.1|EH222417
EST:     CACCCCAGTGATGGTTCAGCGTTGTAAAATCATTTGATGCTCCAATAAAG                         CTTTTGTTCCCCACAGCAGATTCAGCAAGGCCATTTTCAATGCTTGGCCTT
genomic: CACCCCAGTGATGG-TCAGCGTTGCAAAATCATTTGATGCTCCAATAAAGgttagttttt ... tattttgcagCTTTTGTTCCCCACAGCAGATTCAGCAAGGCCATTTTCAATGCTTGGCCTT
EST: gi|192327708|gb|FK020699.1|FK020699
EST:     TCACCCCAGTGATGGTCAGCGTTGCAAAATCATTTGATGCTCCAATAAAG                         CTTTTGTTCCCCACAGCAGATTCAGCAAGGCCATTTTCAATGCTTGGCCTT
genomic: TCACCCCAGTGATGGTCAGCGTTGCAAAATCATTTGATGCTCCAATAAAGgttagttttt ... tattttgcagCTTTTGTTCCCCACAGCAGATTCAGCAAGGCCATTTTCAATGCTTGGCCTT
EST: gi|26267892|gb|CA818955.1|CA818955
EST:     TCACCCCAGTGATGGTCAGCGTTGCAAAATCATTTGATGCTCCAATAAAG                         CTTTTGTTCCCCACAGCAGATTCAGCAAGGCCATTTTCAATGCTTGGCCTT
genomic: TCACCCCAGTGATGGTCAGCGTTGCAAAATCATTTGATGCTCCAATAAAGgttagttttt ... tattttgcagCTTTTGTTCCCCACAGCAGATTCAGCAAGGCCATTTTCAATGCTTGGCCTT