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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTTGATTTGCGGGATCCTTGGCCTTCCTCCTTCAAATGGAGTCCTTCCACAGTCCCCCATGCATACAAAGAGTTTAGCAGTTCTTAGGAGGCGGgtaagtatcatctattgcatcaagtctattggttcttatttattagatatcaactaaatttagattcttgttttacgttatcaattttcag

Basic information

species Glycine max
transcript GLYMA04G07390.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G07390.1 (Glycine max), 5'ss of exon 8
lower sequence: AT4G32510.1 (Arabidopsis thaliana), 5'ss of exon 8
ACTTTGATTTGCGGGATCCTTGGCCTTCCTCCTTCAAATGGAGTCCTTCCACAGTCCCCCATGCATACAAAGAGTTTAGCAGTTCTTAGGAGGCGGgtaagtatcatctattgcatcaagtctattggttcttatttattagatatcaactaaatttagattcttgttttacgttatcaattttcag
||  | || || ||  | ||||| ||||||||||| ||||| ||| ||||||| ||||| ||||| ||||||||| | |||||||||| || || ||| ||    |        ||| | |   ||    |||| || ||  | ||    | || |  ||  | | ||||    ||||||||  |||
ACACTAATCTGTGGCCTACTTGGACTTCCTCCTTCGAATGGGGTCATTCCACAATCCCCTATGCACACAAAGAGTCTTGCAGTTCTTAAGAAGCAGgttagagaaa--------atcgaataatttttcccttagttttt--acattgtttgaaatctgaaacgttttttg---tatcaattg-cag

upper sequence: GLYMA04G07390.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv04s0008g04980.t01 (Vitis vinifera), 5'ss of exon 8
ACTTTGATTTGCGGGATCCTTGGCCTTCCTCCTTCAAATGGAGTCCTTCCACAGTCCCCCATGCATACAAAGAGTTTAGCAGTTCTTAGGAGGCGGgtaagtatcatctattgcatcaagtctattggttcttatttatt---------agatatcaa----ctaaatttagattcttgttttacgttatcaattttcag---
||| || |||| ||| | |||||  |||||||||||||||||||||| ||||| ||||||||||| || |||||| | ||||| || | || || |||  | ||  ||||||  | | ||   ||   ||| | || | |         |  | ||||    | | |||| |||||||     || | ||  ||  |  |   
ACTCTGCTTTGTGGGTTGCTTGGATTTCCTCCTTCAAATGGAGTCCTCCCACAATCCCCCATGCACACTAAGAGTCTTGCAGTCCTCAAGAAGCTGgtggg-atattctattctacctagaagataatttcctcttcactgatagtgctaactgtcaataacccagatttggattcttagacaacatgatttatactttgtag