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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGAAAAAGTTGACAGCTCCCTTGAGTTTCTTATTCTGGCCAGTGACGGGCTATGGGATGTTGTCTCTAATGAGgtttgtactgatgttcatttcttctcattgatgactaaaacgcatcttcatcataaccactaaaagtaggagcaaaatggagcaaaaaggatataaaaac...

Basic information

species Glycine max
transcript GLYMA04G06250.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G06250.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G056572_T03 (Zea mays), 5'ss of exon 7
GAAGAAAAAGTTGACAGCTCCCTTGAGTTTCTTATTCTGGCCAGTGACGGGCTATGGGATGTTGTCTCTAATGAGgt--ttgtactgatgttcatttcttctcattgatgactaaaacgcatcttcatcataaccactaaaagtaggagcaaaatggagcaaaaaggatataaaaac-------------------
   |||   |||||   | | || ||||||||||| || || ||||| ||||| |||||||| |||||||| |||||  ||      |||   |            ||  | |    ||     |      |  || |     |||   |  | |    |     ||  ||                         
---GAAGTTGTTGATGACACACTCGAGTTTCTTATCCTTGCAAGTGATGGGCTGTGGGATGTGGTCTCTAACGAGgtaatttaggaaatgcggagccggagctccagaatattttgccggtcgcttgctgcactcattgtgcttagtgccttagtaccacctgttggcaatgttctttacaatgtttgccatgcag

upper sequence: GLYMA04G06250.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G166035_T01 (Zea mays), 5'ss of exon 7
GAAGAAAAAGTTGACAGCTCCCTTGAGTTTCTTATTCTGGCCAGTGACGGGCTATGGGATGTTGTCTCTAATGAGgtttgtactgatgtt----catttcttctcattgatgactaaaacgcatcttcatcataaccactaaaagtaggagcaaaatggagcaaaaaggatataaaaac
|| ||    || |||||||||||||| || || || || || || ||||| || |||||||||||| ||||||||||   ||| ||||||     || ||| ||        | |     |  | |   |||   ||||   | |||   | |   |  ||                  
GAGGAGGTGGTCGACAGCTCCCTTGAATTCCTCATCCTTGCTAGCGACGGACTCTGGGATGTTGTCACTAATGAGgtacctacagatgttactaaatatctccttcggtgcaattggtctgtctgtctgtcact-ccacctgatgtaat-gtattttacag------------------

upper sequence: GLYMA04G06250.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM5G829894_T03 (Zea mays), 5'ss of exon 2
GAAGAAAAAGTTGACAGCTCCCTTGAGTTTCTTATTCTGGCCAGTGACGGGCTATGGGATGTTGTCTCTAATGAGgtttgtactgatgtt--catttcttctcattgatgactaaaacgcatcttcatcataaccactaaaagtaggagcaaaatggagcaaaaaggatataaaaac
|| ||    || |||||||||||||| || || || || || ||||| || || |||||||||||| ||||||||||   ||| ||| ||   |  | |  ||||| |   | ||   |  | |   |||     ||   | ||          |  ||                  
GAGGAGGTGGTCGACAGCTCCCTTGAATTCCTCATCCTTGCTAGTGATGGACTCTGGGATGTTGTCACTAATGAGgtacctacagatattgctaaatatattcattcagtgc-aattggtctgtctgtcactcttacctgacgttatgtatttttccag------------------

upper sequence: GLYMA04G06250.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G056572_T02 (Zea mays), 5'ss of exon 7
GAAGAAAAAGTTGACAGCTCCCTTGAGTTTCTTATTCTGGCCAGTGACGGGCTATGGGATGTTGTCTCTAATGAGgt--ttgtactgatgttcatttcttctcattgatgactaaaacgcatcttcatcataaccactaaaagtaggagcaaaatggagcaaaaaggatataaaaac-------------------
|| |||   |||||   | | || ||||||||||| || || ||||| ||||| |||||||| |||||||| |||||  ||      |||   |            ||  | |    ||     |      |  || |     |||   |  | |    |     ||  ||                         
GAGGAAGTTGTTGATGACACACTCGAGTTTCTTATCCTTGCAAGTGATGGGCTGTGGGATGTGGTCTCTAACGAGgtaatttaggaaatgcggagccggagctccagaatattttgccggtcgcttgctgcactcattgtgcttagtgccttagtaccacctgttggcaatgttctttacaatgtttgccatgcag

upper sequence: GLYMA04G06250.1 (Glycine max), 5'ss of exon 8
lower sequence: AT4G31750.1 (Arabidopsis thaliana), 5'ss of exon 8
GAAGAAAAAGTTGACAGCTCCCTTGAGTTTCTTATTCTGGCCAGTGACGGGCTATGGGATGTTGTCTCTAATGAGgtttgtactgatgttcatttcttctcattgatgactaaaacgcatcttcatcataaccactaaaagtaggagc--aaaatggagcaaaaaggatataaaaac-----
|| ||||||||||| ||||| || |||||||| ||||| || ||||| || || ||||| ||||| ||||| |||||  | | ||   ||   ||  |    ||      ||||   | ||||  | | |  | | ||   | |||    ||||  || |       | ||    |      
GAGGAAAAAGTTGATAGCTCTCTCGAGTTTCTCATTCTTGCAAGTGATGGTCTCTGGGACGTTGTATCTAACGAGgtaggaagtgtcatttgatttctaaacttccctgttaaacttcctctttttaacattc-ccaatcctcggactcaaaaactgatctctgttcaaatctttatttcag

upper sequence: GLYMA04G06250.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv04s0008g07320.t01 (Vitis vinifera), 5'ss of exon 8
GAAGAAAAAGTTGACAGCTCCCTTGAGTTTCTTATTCTGGCCAGTGACGGGCTATGGGATGTTGTCTCTAATGAGgtttgtactgatgttc--atttctt----ctcattgatg-actaaa--acgcatcttcat-cataaccactaaaagtaggagcaaaatggagcaaaa-aggatataaaaac
|| |||||  ||||||||||||| ||||||||||| || |||||||| || || |||||||||||| | ||||||||||||  |   || |  |||||||    | ||||  |    || |    | || ||||  || ||||  | | |||       | |   |  |    |  || ||  |  
GAGGAAAAGATTGACAGCTCCCTCGAGTTTCTTATCCTTGCCAGTGATGGACTGTGGGATGTTGTCACAAATGAGgtttgttttctcgtccctatttctttatgcccatttgtatggtagatggtggatattcacacacaacccttcacagtcttcctcatagctaatacgtcaccatttatcag-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9984727|gb|BE658835.1|BE658835
EST:     GTGACGGGCTATGGGATGTTGTCTCTAATGAG                         GAAGCTGTTGCTATGATAAAGCCAATTGAGGATGCAGAGGAGGCAGCAAAG
genomic: GTGACGGGCTATGGGATGTTGTCTCTAATGAGgtttgtactg ... ctttcttcagGAAGCTGTTGCTATGATAAAGCCAATTGAGGATGCAGAGGAGGCAGCAAAG
EST: gi|192313213|gb|FK003333.1|FK003333
EST:     AGTTTCTTATTCTGGCCAGTGACGGGCTATGGGATGTTGTCTCTAATGAG                         GAAGCTGTTGCTATGATAAAGCCAATTGAGGATGCAGAGGAGGCAGCAAAG
genomic: AGTTTCTTATTCTGGCCAGTGACGGGCTATGGGATGTTGTCTCTAATGAGgtttgtactg ... ctttcttcagGAAGCTGTTGCTATGATAAAGCCAATTGAGGATGCAGAGGAGGCAGCAAAG
EST: gi|120491569|gb|EH219736.1|EH219736
EST:     AGTTTCTTATTCTGGCCAGTGACGGGCTATGGGATGTTGTCTCTAATGAG                         GAAGCTGTTGCTATGATAAAGCCAATTGAGGATGCAGAGGAGGCAGCAAAG
genomic: AGTTTCTTATTCTGGCCAGTGACGGGCTATGGGATGTTGTCTCTAATGAGgtttgtactg ... ctttcttcagGAAGCTGTTGCTATGATAAAGCCAATTGAGGATGCAGAGGAGGCAGCAAAG
EST: gi|254334939|gb|GR844724.1|GR844724
EST:     AGTTTCTTATTCTGGCCAGTGACGGGCTATGGGATGTTGTCTCTAATGAG                         GAAGCTGTTGCTATGATAAAGCCAATTGAGGATGCAGAGGAGGCAGCAAAG
genomic: AGTTTCTTATTCTGGCCAGTGACGGGCTATGGGATGTTGTCTCTAATGAGgtttgtactg ... ctttcttcagGAAGCTGTTGCTATGATAAAGCCAATTGAGGATGCAGAGGAGGCAGCAAAG
EST: gi|6200840|gb|AW152940.1|AW152940
EST:     GTGACGGGCTATGGGATGTTGTCTCTAATGAG                         GAAGCTGTTGCTATGATAAAGCCAATTGAGGATGCAGAGGAGGCAGCAAAG
genomic: GTGACGGGCTATGGGATGTTGTCTCTAATGAGgtttgtactg ... ctttcttcagGAAGCTGTTGCTATGATAAAGCCAATTGAGGATGCAGAGGAGGCAGCAAAG
EST: gi|209722646|gb|BW654653.1|BW654653
EST:     AGTTTCTTATTCTGGCCAGTGACGGGCTATGGGATGTTGTCTCTAATGAG                         GAAGCTGTTGCTATGATAAAGCCAATTGAGGATGCAGAGGAGGCAGCAAAG
genomic: AGTTTCTTATTCTGGCCAGTGACGGGCTATGGGATGTTGTCTCTAATGAGgtttgtactg ... ctttcttcagGAAGCTGTTGCTATGATAAAGCCAATTGAGGATGCAGAGGAGGCAGCAAAG
EST: gi|192313214|gb|FK003334.1|FK003334
EST:     AGTTTCTTATTCTGGCCAGTGACGGGCTATGGGATGTTGTCTCTAATGAG                         GAAGCTGTTGCTATGATAAAGCCAATTGAGGATGCAGAGGAGGCAGCAAAG
genomic: AGTTTCTTATTCTGGCCAGTGACGGGCTATGGGATGTTGTCTCTAATGAGgtttgtactg ... ctttcttcagGAAGCTGTTGCTATGATAAAGCCAATTGAGGATGCAGAGGAGGCAGCAAAG
EST: gi|120492227|gb|EH220394.1|EH220394
EST:     AGTTTCTTATTCTGGCCAGTGACGGGCTATGGGATGTTGTCTCTAATGAG                         GAAGCTGTTGCTATGATAAAGCCAATTGAGGATGCAGAGGAGGCAGCAAAG
genomic: AGTTTCTTATTCTGGCCAGTGACGGGCTATGGGATGTTGTCTCTAATGAGgtttgtactg ... ctttcttcagGAAGCTGTTGCTATGATAAAGCCAATTGAGGATGCAGAGGAGGCAGCAAAG
EST: gi|13311519|gb|BG405170.1|BG405170
EST:     AGTTTCTTATTCTGGCCAGTGACGGGCTATGGGATGTTGTCTCTAATGAG                         GAAGCTGTTGCTATGATAAAGCCAATTGAGGATGCAGAGGAGGCAGCAAAG
genomic: AGTTTCTTATTCTGGCCAGTGACGGGCTATGGGATGTTGTCTCTAATGAGgtttgtactg ... ctttcttcagGAAGCTGTTGCTATGATAAAGCCAATTGAGGATGCAGAGGAGGCAGCAAAG