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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAATCTTTCTTCAAACAATCTTCAAGGCTCCATTCCAATTGAACTCTCACGGATTGGTAATTTGGATACACTgtaagtatgaatgatttaacatgcctccttgtatcaatcctctgatttcattctaatagatgttttcttttcag

Basic information

species Glycine max
transcript GLYMA04G05910.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G05910.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv04s0008g01970.t01 (Vitis vinifera), 5'ss of exon 17
TAATCTTTCTTCAAACAATCTTCAAGGCTCCATTCCAATTGAACTCTCACGGATTGGTAATTTGGATACACTgtaagtatgaat---gatttaacatgcctccttgtatc-----------aatcctctgatt-tcattctaatagatgttttcttttcag
 ||||| || || |||||||||| |||||||||||| |||||  | || ||||||||||| ||||| ||  ||||||||| | |     |||    | ||  ||| | |            |||  | | ||  | ||    ||| || |||| |  ||||
AAATCTCTCCTCCAACAATCTTCGAGGCTCCATTCCTATTGAGTTATCTCGGATTGGTAACTTGGACACCTTgtaagtattagttctattttttttttccctcttctctgctgaagttttaaattatttaataattatatatatatatattttttgctcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193355512|gb|FK322939.1|FK322939
EST:     CAAGGCTCCATTCCAGTTGAACTTTCACGGATTGGTAATTTGGATACACT                         GGATATATCAAATAATAATATAATTGGTTCTATTCCTTCTTCCATTGGTGA
genomic: CAAGGCTCCATTCCAATTGAACTCTCACGGATTGGTAATTTGGATACACTgtaagtatga ... ttcttttcagGGATATATCAAATAATAATATAATTGGTTCTATTCCTTCTTCCATTGGTGA
EST: gi|208328618|gb|GE130826.1|GE130826
EST:     CAAGGCTCCATTCCAATTGAACTCTCACGGATTGGTAATTTGGATACACT                         GGATATATCAAATAATAATATAATTGGTTCTATTCCTTCTTCCATTGGTGA
genomic: CAAGGCTCCATTCCAATTGAACTCTCACGGATTGGTAATTTGGATACACTgtaagtatga ... ttcttttcagGGATATATCAAATAATAATATAATTGGTTCTATTCCTTCTTCCATTGGTGA
EST: gi|193306549|gb|FK269703.1|FK269703
EST:     AATTGAACTCTCACGGATTGGTAATTTGGATACACT                         GGATATATCAAATAATAATATAATTGGTTCTATTCCTTCTTCCATTGGTGA
genomic: AATTGAACTCTCACGGATTGGTAATTTGGATACACTgtaagtatga ... ttcttttcagGGATATATCAAATAATAATATAATTGGTTCTATTCCTTCTTCCATTGGTGA
EST: gi|193374951|gb|FK339889.1|FK339889
EST:     CCAATTGAACTCTCACGGATTGGTAATTTGGATACACT                         GGATATATCAAATAATAATATAATTGGTTCTATTCCTTCTTCCATTGGTGA
genomic: CCAATTGAACTCTCACGGATTGGTAATTTGGATACACTgtaagtatga ... ttcttttcagGGATATATCAAATAATAATATAATTGGTTCTATTCCTTCTTCCATTGGTGA
EST: gi|193438022|gb|FK403147.1|FK403147
EST:     TAATTTGGATACACT                         GGATATATCAAATAATAATATAATTGGTTCTATTCCTTCTTCCATTGGTGA
genomic: TAATTTGGATACACTgtaagtatga ... ttcttttcagGGATATATCAAATAATAATATAATTGGTTCTATTCCTTCTTCCATTGGTGA