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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCAATCACGTGAAGCACCTGTACAAAGGCTTGCAGATTCAATAGCAGGGCCATTTGTATACAGTGTAATGACTTTGTCAGCAGCAACATTTGCATTTTGgtaagtacttgtatttccatacaaattttttagttgataattctatgatttgctccactgatcccaaatggaagtggggtttgccatgactattattaat...

Basic information

species Glycine max
transcript GLYMA04G05900.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G05900.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os03g08070.2 (Oryza sativa), 5'ss of exon 8
CTCAATCACGTGAAGCACCTGTACAAAGGCTTGCAGATTCAATAGCAGGGCCATTTGTATACAGTGTAATGACTTTGTCAGCAGCAACATTTGCATTTTGgtaagt----acttgtatttccatacaaattttttagtt--gataattctatg-atttgctccactgatcccaaatggaagtggggtttgccatgactattattaat--
| ||| |||||||||| || || |||||||||||||||||||| |||||||||||||| || | ||| ||||| ||||| |||||||||||| | || ||||| |     | |    |||   |     |||||   ||   | ||   ||   ||    |  ||||   | | ||  | || |  |  || |       ||||     
CACAAGCACGTGAAGCTCCCGTTCAAAGGCTTGCAGATTCAATTGCAGGGCCATTTGTTTATACTGTTATGACATTGTCTGCAGCAACATTTTCTTTCTGgtatgctcccattctcctttttgttgttgtttttcccttccaaaaagaatacacatgaaatttactggggctacattaacgttgcttcggcaaccttctctattccaag

upper sequence: GLYMA04G05900.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv04s0008g01960.t01 (Vitis vinifera), 5'ss of exon 9
CTCAATCACGTGAAGCACCTGTACAAAGGCTTGCAGATTCAATAGCAGGGCCATTTGTATACAGTGTAATGACTTTGTCAGCAGCAACATTTGCATTTTGgtaagtacttgtatttccatacaaattttttagttgataattctatgatttgctccactgatcccaaatggaagtggggtttgccatgactattattaat---
|||||   |||| ||||||  |||||||||||||||||||||| || || |||||||| || | ||| |||||||| ||||||||||| ||| | ||||||||   |||||    | ||| |   ||||||  ||    |||  |||      |  |   || | |  || |  ||  ||  |    ||        ||    
CTCAAGGCCGTGCAGCACCCATACAAAGGCTTGCAGATTCAATTGCTGGACCATTTGTCTATATTGTGATGACTTTATCAGCAGCAACTTTTACCTTTTGgtataaacttgctccttcatcc---ttttttcttttcctatttaatggaagtatgaaaccatgctagttgaacatgatgtaagaggagatggaaggcaaccac