Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTTGTACAAGAACGAGCGCCAACAGTACCAAGAGGCTTGTCCAGCCAATGTCTTTCCTTCTGCTATATATGGTGCTGAGCATTTGTTACGTCTCTTTGgtatgctcgtttgtctgccacaagacgagcttattatatgatgggtttcaagttcaacttttagttagtttgtcatgactctcgactcattgttgcatca...

Basic information

species Glycine max
transcript GLYMA04G04530.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G04530.2 (Glycine max), 5'ss of exon 8
lower sequence: Vv18s0001g09710.t01 (Vitis vinifera), 5'ss of exon 8
CTTTTGTACAAGAACGAGCGCCAACAGTACCAAGAGGCTTGTCCAGCCAATGTCTTTCCTTCTGCTATATATGGTGCTGAGCATTTGTTACGTCTCTTTGgtatgct----cgtttgtctgccacaagacgagcttattatat-gatgggtttcaagttcaacttttagttagtttgtcatgactctcgactcattgttgcatca
||| ||||  | |  ||||| |||||||| ||||| ||   | ||   ||||||| ||||||  |||||||||||||||| ||| | ||||| |||||||||||| |    |  |  | || ||||| |     |  || | | ||||  ||   | |    |||  | |   |  || | ||| ||    || |  |  |||  
CTTCTGTATGAAAGGGAGCGTCAACAGTATCAAGAAGCAATTGCAAATAATGTCTCTCCTTCAACTATATATGGTGCTGAACATCTATTACGCCTCTTTGgtatgatattcctctaatttgacacaataaatattatttgttttgatgaattcttatt---gcttcaaatggatcagttaggacacttctttcctattcacat--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|4299173|gb|AI442866.1|AI442866
EST:     TGTCTTTCCTTCTGCTATATATGGTGCTGAGCATTTGTTACGTCTCTTTG                         TTAAGCTGCCCGAGTTACTGTTTCATGCTAGTGTTGAAGAGGAGACATTGA
genomic: TGTCTTTCCTTCTGCTATATATGGTGCTGAGCATTTGTTACGTCTCTTTGgtatgctcgt ... aaatttgaagTTAAGCTGCCCGAGTTACTGTTTCATGCTAGTGTTGAAGAGGAGACATTGA
EST: gi|207812636|gb|GD783198.1|GD783198
EST:     TGTCTTTCCTTCTGCTATATATGGTGCTGAGCATTTGTTACGTCTCTTTG                         TTAAGCTGCCCGAGTTACTGTTTCA
genomic: TGTCTTTCCTTCTGCTATATATGGTGCTGAGCATTTGTTACGTCTCTTTGgtatgctcgt ... aaatttgaagTTAAGCTGCCCGAGTTACTGTTTCA
EST: gi|192303059|gb|FG994177.1|FG994177
EST:     TGTCTTTCCTTTTGCTATATATGGTGCTGAGCATTTGTTACGTCTCTTTG                         TTAAGCTGCCCGAGTTACTGTTTCATGCTAGTGTTGAAGAGGAGACATTGA
genomic: TGTCTTTCCTTCTGCTATATATGGTGCTGAGCATTTGTTACGTCTCTTTGgtatgctcgt ... aaatttgaagTTAAGCTGCCCGAGTTACTGTTTCATGCTAGTGTTGAAGAGGAGACATTGA