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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGTTGCCAGAATTTCTGGGAGGTACCTGCACTTGTGAAGATCAGGGAGGTTGCCTTAGATCTGATAAAGGCCCCTGGAAAAACCCTGATATATTCAAGgttatatgctgttcttggttgatattttatagttatactatgtcagtttgagttgtaataggctgacagttgattgcatgtgaattttccacag

Basic information

species Glycine max
transcript GLYMA04G01220.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G01220.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv03s0038g04470.t01 (Vitis vinifera), 5'ss of exon 9
TGAGTTGCCAGAATTTCTGGGAGGTACCTGCACTTGTGAAGATCAGGGAGGTTGCCTTAGATCTGATAAAGGCCCCTGGAAAAACCCTGATATATTCAAGgttatatgctgttcttggttgatat-tttatagttatactatgtcagt-------ttgagttgtaatagg----ctgacagttgattgcatgtgaatt-ttccacag-------------------------------------------
|||||||||||||||||| || |||||||| || |||| ||||||||||||||||||  | |||||||| || || ||||| ||||| |||||||| ||||||  || |||  || || |  | | ||| || || |  ||  | | |       || || ||| || |     || |   || ||| |||| |  |  ||  |  |                                           
TGAGTTGCCAGAATTTCTTGGTGGTACCTGTACGTGTGCAGATCAGGGAGGTTGCCTCCGGTCTGATAAGGGACCATGGAATAACCCAGATATATTGAAGgttccatactggactaggattttttatttttattttttttaaataaatcccatgattaagatgttattgtttcccttatccttcatttcatgagcttcattttattgcttataatgagaaacaattgtgtgcatgtgcaatttgttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192306575|gb|FG996237.1|FG996237
EST:     GTTGCCTTAGATCTGATAAAGGCCCCTGGAAAAACCCTGATATATTCAAG                         ATGGTTCTCACTGGTGGAGCATGGCGGTCAAAACAAGTTGTAAAAGTTCTT
genomic: GTTGCCTTAGATCTGATAAAGGCCCCTGGAAAAACCCTGATATATTCAAGgttatatgct ... ttttccacagATGGTTCTCACTGGTGGAGCATGGCGGTCAAAACAAGTTGTAAAAGTTCTT