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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTTGCAGATCATGATAATTACCATGAGTTTTGTCGTCTTCTTGGTCGGTTCAGAGTGAATTATCAGgtagacttatgtgtagttttttctccttttgtggtgtatctagtggtttctatttctaattggtagtaatgcaaagtacataagcagggacatggggttc...

Basic information

species Glycine max
transcript GLYMA04G00430.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G00430.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os03g42050.1 (Oryza sativa), 5'ss of exon 8
GTCTTGCAGATCATGATAATTACCATGAGTTTTGTCGTCTTCTTGGTCGGTTCAGAGTGAATTATCAGgt-agacttatgtgtagttttttctccttttgtggtgtatctagtggtttc-tatttctaattggtagtaatgcaaagtacataagcagggacatggggttc
||||||| |||||||  |||||||||||||| || || |||||||| || |||| ||||||||  |||||  || |  ||| || ||           ||  |   |  |  | ||||  | |     ||| |   |  ||     | | |  |||      |   |   
GTCTTGCTGATCATGGAAATTACCATGAGTTCTGCCGCCTTCTTGGACGTTTCAAAGTGAATTTCCAGgttggaatcctgt-tacttaaaatgaaggatgaagctaacttgtttgttttgtgtcaaggatttgctctt-tgttctttccctttgcattcttttacagaat

upper sequence: GLYMA04G00430.1 (Glycine max), 5'ss of exon 8
lower sequence: AT5G06120.1 (Arabidopsis thaliana), 5'ss of exon 10
GTCTTGCAGATCATGATAATTACCATGAGTTTTGTCGTCTTCTTGGTCGGTTCAGAGTGAATTATCAGgtagacttatgtgtagttttttctccttttgtggtgtatctagtggtttctatttctaattggtagtaatgcaaagtacataa-gcagggacatggggttc
||||||| ||||||||||||||||| | ||| || ||||| ||||| || || ||  |||||||||||||| | || |  ||    ||   | ||  | |   |  |   ||   | | ||||    |  || |||     || |  ||        | ||||   || 
GTCTTGCTGATCATGATAATTACCACGTGTTCTGCCGTCTACTTGGGCGTTTTAGGCTGAATTATCAGgtaaatttctcggttagattcctttctagtttacagattacggtttgtacaattttgtttgtgttgtagcttgaaatttatgttatgatgccatgtactt-

upper sequence: GLYMA04G00430.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv13s0067g01920.t01 (Vitis vinifera), 5'ss of exon 10
GTCTTGCAGATCATGATAATTACCATGAGTTTTGTCGTCTTCTTGGTCGGTTCAGAGTGAATTATCAGgtagacttatgtgtagttttttctccttttgtggtgtatctagtggtttctatttctaattggtagtaatgcaaagtaca-taagcagggacatggggttc
||||||  |||||||||||||||||||| ||||||||||| ||||| || |||||||| ||||||||||||   || |   |   |   | |  |||| |  |  |       || |     | |  |      |   | | | | |  |  | |  | | |||| || 
GTCTTGTTGATCATGATAATTACCATGAATTTTGTCGTCTCCTTGGACGTTTCAGAGTAAATTATCAGgtaattttctaaattaatgcatttttttttatatttaacaacaatgtattgtcatatggtcacatctttaggagattgctctttgtaccggc-tgggcttt