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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGTGATAATGAGGTTCAGCGCACTATGCTTGAAATTGTGAATCAGCTTGATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAGgttttctgatttggctattatatgattttcactttagttcatactcagttttactgcagatgttaagtcaagaaagtatctcactttagttcatcaagtg...

Basic information

species Glycine max
transcript GLYMA03G42370.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G42370.2 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os02g54340.2 (Oryza sativa), 5'ss of exon 8
GTGGTGATAATGAGGTTCAGCGCACTATGCTTGAAATTGTGAATCAGCTTGATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAGgtttt------ctgatttggctattatatgattttca-ctttagttcatactcag---ttttactgcagatgttaagtcaagaaagt-atctcactttagttcatcaagtg
| |||||||||||||||||||| || ||| | ||||||||||| || || ||||||||||||||  | ||||||||||| ||  ||||||| || ||||||| ||      |  | |  |    ||| |   ||| | | |  |    |  ||||   | |  |  ||   ||  ||   ||||  | | | || |||  |   |     |
GGGGTGATAATGAGGTTCAGCGTACCATGTTGGAAATTGTGAACCAACTCGATGGGTTTGATGCGAGGGGAAACATCAAGGTTCTGATGGCCACAAACAGgtattgcatatcatactgtgtagctatttatctttaaacatctgcatgtgttcaggactatcgccacatgagtagagctgagaagctgaccacattttcttgttttgtcag

upper sequence: GLYMA03G42370.2 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G110185_T04 (Zea mays), 5'ss of exon 7
GTGGTGATAATGAGGTTCAGCGCACTATGCTTGAAATTGTGAATCAGCTTGATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAGgt--tttctgatttggct----attatatgattttcactttagttcatactcagttttactgcagatgttaagtcaagaaagtatctcactttagttcatcaagtg-----------------------------------------------------------------------------
||||||| |||||||| ||||| || ||| | ||||| || || || |||||||||||||||||  | || |||||||||||  | ||||| ||||| ||||  ||| | |||   ||    |||  |     ||   | |  || |  |  | |   ||    ||| || | |     || |    ||    |  |    | |                                                                               
GTGGTGACAATGAGGTGCAGCGTACAATGTTGGAAATAGTAAACCAACTTGATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttttcattctactcgtgattccagatccttttatgtgcttaactcgtactcaaacacaggattttgaatatgtgaacttctgcatgaaacctttataggctccatgccttgagttgatatggcaatttattggccgtatcctaggccctggaagctgaccaccttttcccccctccag

upper sequence: GLYMA03G42370.2 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G181359_T01 (Zea mays), 5'ss of exon 8
GTGGTGATAATGAGGTTCAGCGCACTATGCTTGAAATTGTGAATCAGCTTGATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAGgttttctgatttgg-ctattatatgattttcactttagttcatactcagttttactgcagatgttaag-tcaagaaagtatctcactttagttcatcaagtg
|||| || |||||||| ||||| || ||| | ||||| || || ||||||||||||||||||||  | || |||||||||||  | ||||| ||||| |||| || |  |||   |  || ||   |||    | | ||||    ||  |||   |||  |  |  || || |    | | ||    | ||   |   |   
GTGGCGACAATGAGGTGCAGCGTACAATGTTGGAAATAGTAAACCAGCTTGATGGGTTTGATGCAAGAGGGAACATCAAAGTTCTCATGGCCACTAATAGgtattttatttttttcccttctactctttctcatgtggttccagatccttttatgtgcttacctcgagctctattctgaagctattatcagaagaaacat--

upper sequence: GLYMA03G42370.2 (Glycine max), 5'ss of exon 8
lower sequence: Vv09s0002g00170.t01 (Vitis vinifera), 5'ss of exon 8
GTGGTGATAATGAGGTTCAGCGCACTATGCTTGAAATTGTGAATCAGCTTGATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAGgttttctgatttggctattatatgattttcactttagttcatactcagttttactgcagatgttaagtcaagaaagtatctcactt-tagttcatcaagtg---
|||| || |||||||| ||||| || |||||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||  | |||||||| || |||||   ||  |   |  | ||  |||| |    |  |||  |   |  |   ||||       |   |   |    ||| |  ||  || | ||  | |     
GTGGGGACAATGAGGTCCAGCGTACCATGCTTGAGATTGTAAATCAGCTTGATGGGTTTGATGCTCGAGGAAATATCAAAGTTCTAATGGCAACAAATAGgttagttggct--accttcattggattattgtctgtgttgctgtgc--taccactgttagaaatggttgttggggttatttttctagtaatgcaatatgacaat

upper sequence: GLYMA03G42370.2 (Glycine max), 5'ss of exon 8
lower sequence: PP1S152_13V6.2 (Physcomitrella patens), 5'ss of exon 8
GTGGTGATAATGAGGTTCAGCGCACTATGCTTGAAATTGTGAATCAGCTTGATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAGgt--------tttctgatttggctattatatgatt--------ttcacttt-----agttcatactcagttttactgcagatgttaagtcaagaaagtatctcactttagttcatcaagtg---------------------------------------------------------------------------
| |||||||||||||||||  | || ||||||||||| || ||||| ||||| || || ||||||||||| || |||||||| ||||||||||| || ||||        |  ||||  |   |||  |    ||        |   |||      ||||  |      | |   ||  || |||  ||||  |   |        || || || | |                                                                              
GGGGTGATAATGAGGTTCAAAGAACAATGCTTGAAATCGTCAATCAACTTGACGGTTTCGATGCTCGTGGTAATATCAAAGTATTGATGGCAACGAATAGgtaaaatccctcgctgacatatttatcttgaagttaatggtgctctgcttctgtggagttggtgtaggatctgtttgtggacgttgcgtcagaattatcagaggtgtttgtacacccatcaaatcaataatgtaattcaagcgattttagacagctcaaacattcgccttgtaaacgaacatgtggttttttacag

upper sequence: GLYMA03G42370.2 (Glycine max), 5'ss of exon 8
lower sequence: PP1S49_256V6.1 (Physcomitrella patens), 5'ss of exon 8
GTGGTGATAATGAGGTTCAGCGCACTATGCTTGAAATTGTGAATCAGCTTGATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAGgt----tttctgatttggctatta--tatgattttcactttagttcatactcagttttactgcagatgttaagtcaagaaagtatctcactttagttcatcaa-gtg-----------------------------------------------------------------------------
| |||||||| ||||||||  | || ||||| ||||| || || || || ||||| |||||||| ||||| || || ||||| |||||||||||||||||||    || ||  || |  | |||  |   |  |  |   |  |        |        |   | | || || |   | ||||  | |   | |  || || ||                                                                              
GAGGTGATAACGAGGTTCAAAGAACAATGCTCGAAATAGTCAACCAACTGGATGGTTTTGATGCCCGTGGTAATATTAAAGTATTGATGGCAACTAACAGgtaagattcctctttcgaatgttagttgcaacgtctatgctgctctgcttctatagcctgagtctaggatatgt-agatatgtatggcgcaagaatcaatgaaagtagatatacccgcacctgactgattcttgtgaatctagaaagcttagtcaccttacgaaagcaagtgtggtttgtatag

upper sequence: GLYMA03G42370.2 (Glycine max), 5'ss of exon 8
lower sequence: EFJ13722 (Selaginella moellendorffii), 5'ss of exon 8
GTGGTGATAATGAGGTTCAGCGCACTATGCTTGAAATTGTGAATCAGCTTGATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAGgtttt-ctgatttggctattatatgattttcactttagttcatactcagttttactgcagatgttaagtcaagaaagtatctcactttagttcatcaagtg
|||| || || || || ||  | || ||||| || ||||| |||||||||||||| |||||||||||||| ||||| ||||| |||||||| || |||||||  | | || ||      ||  |  ||| || |  |  | | | |       || |                                            
GTGGCGACAACGAAGTGCAAAGGACGATGCTCGAGATTGTCAATCAGCTTGATGGTTTTGATGCTCGTGGGAACATTAAAGTTTTGATGGCCACGAACAGgtactgccgacttcatc--taagtcttttccaatcaaacttacattactccaaacag--------------------------------------------

upper sequence: GLYMA03G42370.2 (Glycine max), 5'ss of exon 8
lower sequence: EFJ29161 (Selaginella moellendorffii), 5'ss of exon 8
GTGGTGATAATGAGGTTCAGCGCACTATGCTTGAAATTGTGAATCAGCTTGATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAGgtttt-ctgatttggctattatatgattttcactttagttcatactcagttttactgcagatgttaagtcaagaaagtatctcactttagttcatcaagtg
|||| || || || || ||  | || ||||| || ||||| |||||||| ||||| |||||||||||||| ||||| ||||| |||||||| || |||||||  | | || ||      ||  |  ||| || |  |  | | | |       || |                                            
GTGGCGACAACGAAGTGCAAAGGACGATGCTCGAGATTGTCAATCAGCTGGATGGTTTTGATGCTCGTGGGAACATTAAAGTTTTGATGGCCACGAACAGgtactgccgacttcatc--taagtcttttccaatcaaacttacattactccaaacag--------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|214009507|gb|DB988648.1|DB988648
EST:     GATGTGTAACATGCTCAAGGAAACATCAAAGTCTTGATGGCAACTAACAG                         GCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGACCGTAA
genomic: GATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAGgttttctgat ... caatttccagGCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGACCGTAA
EST: gi|16277955|gb|BI942651.1|BI942651
EST:     GATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAG                         GCCTGACACTCTGGATCCAGCACTACTACGACCTGNACGATTGGACCGTAA
genomic: GATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAGgttttctgat ... caatttccagGCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGACCGTAA
EST: gi|208081456|gb|GD884336.1|GD884336
EST:     ATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCCAACTAACAG                         GCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGACCGTAA
genomic: ATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGC-AACTAACAGgttttctgat ... caatttccagGCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGACCGTAA
EST: gi|209718786|gb|BW671987.1|BW671987
EST:     GATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAG                         GCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGACCGTAA
genomic: GATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAGgttttctgat ... caatttccagGCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGACCGTAA
EST: gi|37994041|gb|CF805787.1|CF805787
EST:     GATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAG                         GCCTGACACTCTGGATCCA-CACTACTACGACCTGGACGATTGGCCCGTAA
genomic: GATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAGgttttctgat ... caatttccagGCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGACCGTAA
EST: gi|213600067|gb|DB976026.1|DB976026
EST:     GAAACATCAAAGTCTTGATGGCAACTAACAG                         GCCTGACACTCTGGATCCAGCACTGCAACGACCTGGACGATTGGACCGTAA
genomic: GAAACATCAAAGTCTTGATGGCAACTAACAGgttttctgat ... caatttccagGCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGACCGTAA
EST: gi|209702900|gb|BW667435.1|BW667435
EST:     GATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAG                         GCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGACCGTAA
genomic: GATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAGgttttctgat ... caatttccagGCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGACCGTAA
EST: gi|214007120|gb|DB986168.1|DB986168
EST:     GATGGGTTTGATGCTCGTCGAAACATCAAAGTCTTGATGGCAACTAACAG                         GCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGACCGTAA
genomic: GATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAGgttttctgat ... caatttccagGCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGACCGTAA
EST: gi|193685395|gb|FK626611.1|FK626611
EST:     GATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAG                         GCCTGACACTCTGGGATCCAGCACTACTACGACCTGGACGATTGGACCGTA
genomic: GATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAGgttttctgat ... caatttccagGCCTGACACTCTGG-ATCCAGCACTACTACGACCTGGACGATTGGACCGTA
EST: gi|193658883|gb|FK607300.1|FK607300
EST:     GATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAG                         GCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGACCGTAA
genomic: GATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAGgttttctgat ... caatttccagGCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGACCGTAA
EST: gi|193429086|gb|FK396344.1|FK396344
EST:     CAAAGTCTTGATGGCAACTAACAG                         GCCTGACACTCTGGATCCAGCACTACTACGACCTGGATGATTGGACCGTAA
genomic: CAAAGTCTTGATGGCAACTAACAGgttttctgat ... caatttccagGCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGACCGTAA
EST: gi|193682156|gb|FK621280.1|FK621280
EST:     GATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAG                         GCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGATCGTAA
genomic: GATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAGgttttctgat ... caatttccagGCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGACCGTAA
EST: gi|193322175|gb|FK287053.1|FK287053
EST:     GATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAG                         GCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGATCGTAA
genomic: GATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAGgttttctgat ... caatttccagGCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGACCGTAA
EST: gi|193350834|gb|FK314156.1|FK314156
EST:     TGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAG                         GCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGATCGTAA
genomic: TGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAGgttttctgat ... caatttccagGCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGACCGTAA
EST: gi|193386094|gb|FK352408.1|FK352408
EST:     CTTGATGGCAACTAACAG                         GCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGACCGTAA
genomic: CTTGATGGCAACTAACAGgttttctgat ... caatttccagGCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGACCGTAA
EST: gi|21601986|gb|BQ612317.1|BQ612317
EST:     GATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAG                         GCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGACCGTAA
genomic: GATGGGTTTGATGCTCGTGGAAACATCAAAGTCTTGATGGCAACTAACAGgttttctgat ... caatttccagGCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGACCGTAA
EST: gi|214007458|gb|DB987315.1|DB987315
EST:     GAAACATCAAAGTCTTGATGGCAACTAACAG                         GCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGACCGTAA
genomic: GAAACATCAAAGTCTTGATGGCAACTAACAGgttttctgat ... caatttccagGCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGACCGTAA
EST: gi|213611119|gb|DB974993.1|DB974993
EST:     AACATCAAAGTCTTGATGGCAACTAACAG                         GGCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGACCGTAA
genomic: AACATCAAAGTCTTGATGGCAACTAACAGgttttctgat ... caatttccagGCCTGACACTCTGGATCCAGCACTACTACGACCTGGACGATTGGACCGTAA