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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTTGCCCCTTATGCTCGCAAAAGCGTGTAAATCCATCTGTAGTTTCAGTTTCAGGGTTTGTCTTCTGCTATGCTTGCATATTTAAGTATATTACTCAGgtgagagctctagacatccttactgtgactaatatataacctacatataaatgcaaactggttttacttttcatgattctctatactgacgacttcatga...

Basic information

species Glycine max
transcript GLYMA03G41050.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G41050.1 (Glycine max), 5'ss of exon 8
lower sequence: AT3G04460.1 (Arabidopsis thaliana), 5'ss of exon 9
AATTTGCCCCTTATGCTCGCAAAAGCGTGTAAATCCATCTGTAGTTTCAGTTTCAGGGTTTGTCTTCTGCTATGCTTGCATATTTAAGTATATTACTCAGgtgagagctctagacatccttactgtgactaatatataacctacatataaatgcaaactggt-tttacttttcatgattctctatactgacgacttcatga
  | ||  | ||||||| |||||| |||| ||||||||| || ||  | || || || ||||| ||||||||| ||||| ||||||||||| || |  |||||||  ||| |   ||| ||||| |  ||| |    ||||   |  |   |   | ||  | |     ||  ||| |  || | || |            
CCTCTGTGCTTTATGCTTGCAAAAACGTGCAAATCCATCAGTTGTCACTGTCTCTGGATTTGTTTTCTGCTATTCTTGCGTATTTAAGTATGTTTCAAAGgtgagttctccaa--atcattactct--ctattcccaaaccccaaccttggtattagcttatatccgtcttctatggtaatc-acacag------------

upper sequence: GLYMA03G41050.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv14s0036g01130.t01 (Vitis vinifera), 5'ss of exon 9
AATTTGCCCCTTATGCTCGCAAAAGCGTGTAAATCCATCTGTAGTTTCAGTTTCAGGGTTTGTCTTCTGCTATGCTTGCATATTTAAGTATATTACTCAGgtgagagctctagacatccttactgtgactaatatataacctacatataaatgcaaactggttttacttttcatgattctctatactgacgacttcatga---
||| |||||  ||||||| || ||||||  ||||||||| |||||| | || ||||||||||||||||||||||||||||||||||||||| || ||||||||||  ||| ||      ||    |||||| |   |   ||  | ||  |     | |  || |  |  | |  |   |   ||  |  |      |||   
AATATGCCCTCTATGCTCACAGAAGCGTACAAATCCATCAGTAGTTGCTGTATCAGGGTTTGTCTTCTGCTATGCTTGCATATTTAAGTATGTTTCTCAGgtgaggtctccagtttcttttcagttgactatttcct---cttgaaatggaattttattttttgtgttaatgagaagatttgttaaagggggtggtgtgagta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31469541|gb|CD411569.1|CD411569
EST:     TTTCAGGGTTTGTCTTCTGCTATGCTTGCATATTTAAGTATATTACTCAG                         TATAAGCGCTGCCCAATTACTTTAATGCCTTCAACGGTTGACCAGATAAGG
genomic: TTTCAGGGTTTGTCTTCTGCTATGCTTGCATATTTAAGTATATTACTCAGgtgagagctc ... cccattacagTATAAGCGCTGCCCAATTACTTTAATGCCTTCAACGGTTGACCAGATAAGG
EST: gi|193425543|gb|FK388648.1|FK388648
EST:     TTTCAGGGTTTGTCTTCTGCTATGCTTGCATATTTAAGTATATTACTCAG                         TATAAGCGCTGCCCAATTACTTTAANGCCTTCAACGGTTGACCAGATAAGG
genomic: TTTCAGGGTTTGTCTTCTGCTATGCTTGCATATTTAAGTATATTACTCAGgtgagagctc ... cccattacagTATAAGCGCTGCCCAATTACTTTAATGCCTTCAACGGTTGACCAGATAAGG
EST: gi|207741506|gb|GD717656.1|GD717656
EST:     TTTCAGGGTTTGTCTTCTGCTATGCTTGCATATTTAAGTATATTACTCAG                         TATAAGCGCTGCCCAATTACTTTAATGCCTTCAACGGTTGACCAGATAAGG
genomic: TTTCAGGGTTTGTCTTCTGCTATGCTTGCATATTTAAGTATATTACTCAGgtgagagctc ... cccattacagTATAAGCGCTGCCCAATTACTTTAATGCCTTCAACGGTTGACCAGATAAGG