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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACTCTACAGATCGTGAGGTTGCTCTTATGATGCTAATGGCATACCTTTCCTACATTCTGGCTGAAgtaagttttaaagaacttcagaaatgttctgtacagtatgtcttttttgagctctatatctattttttgttgtggtacattcattaatcattaacgggttctgatatattctgcag

Basic information

species Glycine max
transcript GLYMA03G40290.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G40290.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os07g47100.2 (Oryza sativa), 5'ss of exon 8
GCACTCTACAGATCGTGAGGTTGCTCTTATGATGCTAATGGCATACCTTTCCTACATTCTGGCTGAAgtaagttttaaagaacttcagaaatgttctgtacagtatgtcttttttgagctctatatctattttttgttgtggtacattcattaatcattaacgggttctgatatattctgcag
||| ||||| || ||||||||||| ||||||||||| ||||| |||||||| || || |||||||| ||  |  |       |||       ||     |   |   | |  ||| |  | ||||  |   |||| |  |  |   ||  ||    |||  | |                   
GCATTCTACTGACCGTGAGGTTGCCCTTATGATGCTCATGGCTTACCTTTCATATATGCTGGCTGAGgtgtgcctctg----ctttgatgcagtatcaaaatttgcatatagtttca-ttttatagtttgattttatc-tactttgtttgtttgatattggcag-------------------

upper sequence: GLYMA03G40290.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G027851_T03 (Zea mays), 5'ss of exon 6
GCACTCTACAGATCGTGAGGTTGCTCTTATGATGCTAATGGCATACCTTTCCTACATTCTGGCTGAAgtaagttttaaagaacttcagaaatgttctgtacagtatgtcttttttgagctctatatctattttttgttgtggtacattcattaatcattaacgggttctgatatattctgcag
||| || || || ||||||||||| ||||||||||| ||||| ||||| |||||||| ||||| || ||     |   |     |||||  ||    | |  | |  ||    |||   |||   ||| ||   ||     || |||  ||    ||||  | |                   
GCATTCCACTGACCGTGAGGTTGCGCTTATGATGCTCATGGCTTACCTCTCCTACATGCTGGCCGAGgtgcacctctga-----tcagatgtg----gcaagggaattcacgcttgttgtcttactctcttaactgactctgttcatatatatggcatttgcag-------------------

upper sequence: GLYMA03G40290.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv14s0030g00710.t01 (Vitis vinifera), 5'ss of exon 8
GCACTCTACAGATCGTGAGGTTGCTCTTATGATGCTAATGGCATACCTTTCCTACATTCTGGCTGAAgtaag----ttttaaagaacttcagaaatgttctgtacagtatgtcttttttgagctctatatctattttttgtt--gtggtacattcattaatcattaacgggttctgatatattctgcag-----------------
||||||||| ||||| |||||||| ||||||||||| |||||||||||||||||||| || |||||||||||     ||| ||   |||  | | |   |||  |  | |    | || |   |   | |    |||   ||     ||| ||  || ||||||| |   ||  |   ||  |  | |                  
GCACTCTACTGATCGGGAGGTTGCCCTTATGATGCTTATGGCATACCTTTCCTACATACTTGCTGAAgtaagatttcttttaacttcttgggcacttccctggcccctgttgtctattggcattgagtgttctatttagattcaacagtagatatatcaatcattta-aagtctttccattgttagtaactttggttgtcctgcag