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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATAATCCATTATTGATCGAGTGTTTTGATTTCAATAGCAGCGGCAATCATGTACTTATTGGgtaatgataattcaattactgaaaattggttaatgtttttgttgggcctatgcttttctagttcaaggatgcaaagcgtattgatgtcaaatttattgccatcag

Basic information

species Glycine max
transcript GLYMA03G40220.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G40220.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv14s0030g00600.t01 (Vitis vinifera), 5'ss of exon 6
GATAATCCATTATTGATCGAGTGTTTTGATTTCAATAGCAGCGGCAATCATGTACTTATTGGgtaat-gataattcaattactgaaaattggttaatgtttttgttgggcctatgcttttctagttcaaggatgcaaagcgtattgatgtcaaatttattgccatcag------------------------------
||||| |||||| | |||||||| |||||||||||||| || || ||||||||||| || |||||||  || | || ||| ||   | | | ||  | || |  |      |  | |||| |   |   |  | | ||   |  ||   |||   ||  |  | | ||                              
GATAACCCATTAGTTATCGAGTGCTTTGATTTCAATAGTAGTGGGAATCATGTACTGATCGGgtaattaatgaatctatttcttttattagttttttattatcatcc--tttcagttttttttcctttggtttaccaaattttatgtcatcatcctttgtttcctgagatatgtcaactttgaaaattcctttatcag

upper sequence: GLYMA03G40220.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv14s0030g00550.t01 (Vitis vinifera), 5'ss of exon 5
GATAATCCATTATTGATCGAGTGTTTTGATTTCAATAGCAGCGGCAATCATGTACTTATTGGgtaat-gataattcaattactgaaaattggttaatgtttttgttgggcctatgcttttctagttcaaggatgcaaagcgtattgatgtcaaatttattgccatcag------------------------------
||||| |||||| | |||||||| |||||||||||||  || || ||||||||||| || |||||||  || | || ||| ||   | | | ||  | || |  |      |  | |||| |   |   |  | | ||   |  ||   |||   ||  |  | | ||                              
GATAACCCATTAGTTATCGAGTGCTTTGATTTCAATACTAGTGGGAATCATGTACTGATCGGgtaattaatgaatctatttctcttattagttttttattatcatcc--tttcagttttttttcctttggtttaccaaattttatgtcatcatcctttgtttcctgagatatgtcaactttgaaaattcctttatcag

upper sequence: GLYMA03G40220.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv12s0121g00080.t01 (Vitis vinifera), 5'ss of exon 8
GATAATCCATTATTGATCGAGTGTTTTGATTTCAATAGCAGCGGCAATCATGTACTTATTGGgtaat-gataattcaattactgaaaattggttaatgtttttgttgggcctatgcttttctagttcaaggatgcaaagcgtattgatgtcaaatttattgccatcag------------------------------
||||| |||||| | |||||||| |||||||||||||  || || ||||||||||| || |||||||  || | || ||| ||   | | | ||  | || |  |      |  | |||| |   |   |  | | ||   |  ||   |||   ||  |  | | ||                              
GATAACCCATTAGTTATCGAGTGCTTTGATTTCAATACTAGTGGGAATCATGTACTGATCGGgtaattaatgaatctatttcttttattagttttttattatcatcc--tttcagttttttttcctttggtttaccaaattttatgtcatcatcctttgtttcctgagatatgtcaactttgaaaattcctttatcag

upper sequence: GLYMA03G40220.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv14s0030g00500.t01 (Vitis vinifera), 5'ss of exon 8
GATAATCCATTATTGATCGAGTGTTTTGATTTCAATAGCAGCGGCAATCATGTACTTATTGGgtaatgata--attcaattactgaaaattggttaatgtttttgt----tgggcctatgcttttctagttcaaggatgcaaagcgtattgatgt--caaatttattgccatcag-------------------------------------------------
||||| |||||| | |||||||| |||||||||||||| || || ||||||||||| |||||||||| |||  | || ||| ||   | | | ||  | || |  |    |  |  | |  |||| |  ||      |     |    ||| | |  |||||||  || ||||                                                   
GATAACCCATTAGTTATCGAGTGCTTTGATTTCAATAGTAGTGGGAATCATGTACTGATTGGgtaattatacgaatctatttctcttattagttttttattatcatccttttagtttttttttttttttttttttttttttttgtactttggtttaccaaattttatgtcatcgtcctttgtttcttgagatataaatgttaactttgaaaattccttcatcag

upper sequence: GLYMA03G40220.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv14s0030g00540.t01 (Vitis vinifera), 5'ss of exon 6
GATAATCCATTATTGATCGAGTGTTTTGATTTCAATAGCAGCGGCAATCATGTACTTATTGGgtaatgata--attcaattactgaaaattggttaatgtttttgttgggcctatgcttttctagttca---aggatgcaaagcgtattgatgtcaaatttattgccatcag----------------------------------
||||| |||||| | |||||||| |||||||||||||| || || ||||||||||| |||||||||| |||  | || ||| ||   | | | ||  | || |  |        |  |||| |  |||     |  | | ||   |  ||   |||   ||  |  | | ||                                  
GATAACCCATTAGTTATCGAGTGCTTTGATTTCAATAGTAGTGGGAATCATGTACTGATTGGgtaattatacgaatctatttctctcattagttttttattatcatccttttcgtttttttttttttcctttggtttaccaaattttatgtcatcatcctttgtttcttgagatataaatgttaactttgaaaattccttcatcag