Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATAATCCATTAGTGATCGAGTGTTTTGATTTCAATAGCAGCGGCGATCATGTACTTATTGGgtaataatgcaattattagaaactggcttatatttttgttgggcatggatgcaaaatacattgatatcaaaattcattgcaatcag

Basic information

species Glycine max
transcript GLYMA03G40210.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G40210.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv14s0030g00600.t01 (Vitis vinifera), 5'ss of exon 6
GATAATCCATTAGTGATCGAGTGTTTTGATTTCAATAGCAGCGGCGATCATGTACTTATTGGgtaat-aatgcaattattagaa--actggcttatatttttgttgggcatggatgcaaaatacattgatatcaaaattcattgcaatcag---------------------------------------------
||||| |||||||| |||||||| |||||||||||||| || ||  |||||||||| || ||||||| |||| |  ||||      | | | || |  || |  |       | |          | | |  | |||||   ||  ||||                                              
GATAACCCATTAGTTATCGAGTGCTTTGATTTCAATAGTAGTGGGAATCATGTACTGATCGGgtaattaatgaatctatttcttttattagttttttattatcatcctttcagttttttttcctttggtttaccaaattttatgtcatcatcctttgtttcctgagatatgtcaactttgaaaattcctttatcag

upper sequence: GLYMA03G40210.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv14s0030g00570.t01 (Vitis vinifera), 5'ss of exon 9
GATAATCCATTAGTGATCGAGTGTTTTGATTTCAATAGCAGCGGCGATCATGTACTTATTGGgtaat-aatgcaattattagaa--actggcttatatttttgttgggcatggatgcaaaatacattgatatcaaaattcattgcaatcag---------------------------------------------
||||| |||||||| |||||||| |||||||||||||  || ||  ||||||| || || ||||| | |||| |  ||||      | | | || |  || |  |       | |    |     | | |  | |||||   ||  ||||                                              
GATAACCCATTAGTTATCGAGTGCTTTGATTTCAATACTAGTGGGAATCATGTGCTGATCGGgtagttaatgaatctatttctcttattagttttttattatcatcctttcagttttttatcctttggtttaccaaattttatgtcatcatcctttgtttcctgagatatgtcaactttgaaaattcctttatcag

upper sequence: GLYMA03G40210.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv14s0030g00550.t01 (Vitis vinifera), 5'ss of exon 5
GATAATCCATTAGTGATCGAGTGTTTTGATTTCAATAGCAGCGGCGATCATGTACTTATTGGgtaat-aatgcaattattagaa--actggcttatatttttgttgggcatggatgcaaaatacattgatatcaaaattcattgcaatcag---------------------------------------------
||||| |||||||| |||||||| |||||||||||||  || ||  |||||||||| || ||||||| |||| |  ||||      | | | || |  || |  |       | |          | | |  | |||||   ||  ||||                                              
GATAACCCATTAGTTATCGAGTGCTTTGATTTCAATACTAGTGGGAATCATGTACTGATCGGgtaattaatgaatctatttctcttattagttttttattatcatcctttcagttttttttcctttggtttaccaaattttatgtcatcatcctttgtttcctgagatatgtcaactttgaaaattcctttatcag

upper sequence: GLYMA03G40210.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv12s0121g00080.t01 (Vitis vinifera), 5'ss of exon 8
GATAATCCATTAGTGATCGAGTGTTTTGATTTCAATAGCAGCGGCGATCATGTACTTATTGGgtaat-aatgcaattattagaa--actggcttatatttttgttgggcatggatgcaaaatacattgatatcaaaattcattgcaatcag---------------------------------------------
||||| |||||||| |||||||| |||||||||||||  || ||  |||||||||| || ||||||| |||| |  ||||      | | | || |  || |  |       | |          | | |  | |||||   ||  ||||                                              
GATAACCCATTAGTTATCGAGTGCTTTGATTTCAATACTAGTGGGAATCATGTACTGATCGGgtaattaatgaatctatttcttttattagttttttattatcatcctttcagttttttttcctttggtttaccaaattttatgtcatcatcctttgtttcctgagatatgtcaactttgaaaattcctttatcag

upper sequence: GLYMA03G40210.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv14s0030g00500.t01 (Vitis vinifera), 5'ss of exon 8
GATAATCCATTAGTGATCGAGTGTTTTGATTTCAATAGCAGCGGCGATCATGTACTTATTGGgtaataatgcaa----------------------ttattagaaac----tggcttatatttttgttgggcatggatgcaaaatacattgatat-caaaattcattgcaatcag-------------------------------------------------
||||| |||||||| |||||||| |||||||||||||| || ||  |||||||||| |||||||||| || | |                      ||||||  | |    | | || | ||||| ||     |   |      ||| ||| | | | |||||   ||  |||                                                   
GATAACCCATTAGTTATCGAGTGCTTTGATTTCAATAGTAGTGGGAATCATGTACTGATTGGgtaattatacgaatctatttctcttattagttttttattatcatccttttagtttttttttttttttttttttttttttttgtactttggtttaccaaattttatgtcatcgtcctttgtttcttgagatataaatgttaactttgaaaattccttcatcag

upper sequence: GLYMA03G40210.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv14s0030g00540.t01 (Vitis vinifera), 5'ss of exon 6
GATAATCCATTAGTGATCGAGTGTTTTGATTTCAATAGCAGCGGCGATCATGTACTTATTGGgtaataatgcaa--------ttattagaaactggcttatatttttgttgggcatggatgcaaaatacattgatat-caaaattcattgcaatcag-------------------------------------------------
||||| |||||||| |||||||| |||||||||||||| || ||  |||||||||| |||||||||| || | |         | | |  |  |   |  |||  |  ||     |   |      | | ||| | | | |||||   ||  ||||                                                  
GATAACCCATTAGTTATCGAGTGCTTTGATTTCAATAGTAGTGGGAATCATGTACTGATTGGgtaattatacgaatctatttctctcattagttttttattatcatccttttcgtttttttttttttcctttggtttaccaaattttatgtcatcatcctttgtttcttgagatataaatgttaactttgaaaattccttcatcag