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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAGAGGAAACAGTTGCTAATGTGATGAAGAGACCGTATTATATGGATGCAACAAGGGCAAAGGAATTTGGGGTCATTGACAGAgtaagtacttatgtatatagtgtgtcttcttcagtctctatgctcttgaacatgcattgctgacctaacctatgctggaactgttcccag

Basic information

species Glycine max
transcript GLYMA03G39570.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207803981|gb|GD774046.1|GD774046
EST:     CGTATTATATGGATGCAACAAGGGCAAAGGAATTTGGGGTCATTGACAGA                         ATTCTTTGGCGTGGCCAGGAAAAGGTTATGGCAGATGTTGCTTCTCCAGAT
genomic: CGTATTATATGGATGCAACAAGGGCAAAGGAATTTGGGGTCATTGACAGAgtaagtactt ... ctgttcccagATTCTTTGGCGTGGCCAGGAAAAGGTTATGGCAGATGTTGCTTCTCCAGAT
EST: gi|151402798|gb|EV272611.1|EV272611
EST:     CGTATTATATGGATGCAACAAGGGCAAAGGAATTTGGGGTCATTGACAGA                         ATTCTTTGGCGTGGCCAGGAAAAGGTTATGGCAGATGTTGCTTCTCCAGAT
genomic: CGTATTATATGGATGCAACAAGGGCAAAGGAATTTGGGGTCATTGACAGAgtaagtactt ... ctgttcccagATTCTTTGGCGTGGCCAGGAAAAGGTTATGGCAGATGTTGCTTCTCCAGAT
EST: gi|208067579|gb|GD865667.1|GD865667
EST:     CGTATTATATGGATGCAACAAGGGCTAAGGAATTTGGGGTCATTGATAGA                         ATTCTTTGGCGTGGTCAGGAAAAGGTTATGGCAGATGTTGCTTCTCCAGAT
genomic: CGTATTATATGGATGCAACAAGGGCAAAGGAATTTGGGGTCATTGACAGAgtaagtactt ... ctgttcccagATTCTTTGGCGTGGCCAGGAAAAGGTTATGGCAGATGTTGCTTCTCCAGAT
EST: gi|193348287|gb|FK309495.1|FK309495
EST:     CGTATTATATGGATGCAACAAGGGCAAAGGAATTTGGGGTCATTGACAGA                         ATTCTTTGGCGTGGCCAGGAAAAGGTTATGGCAGATGTTGCTTCTCCAGAT
genomic: CGTATTATATGGATGCAACAAGGGCAAAGGAATTTGGGGTCATTGACAGAgtaagtactt ... ctgttcccagATTCTTTGGCGTGGCCAGGAAAAGGTTATGGCAGATGTTGCTTCTCCAGAT
EST: gi|193585773|gb|FK539549.1|FK539549
EST:     CATATTATATGGATGCAACAAGGGCTAAGGAATTTGGGGTCATTGATAGA                         ATTCTTTGGCGTGGCCAGGAAAAGGTTATGGCAGATGTTGCTTCTCCAGAT
genomic: CGTATTATATGGATGCAACAAGGGCAAAGGAATTTGGGGTCATTGACAGAgtaagtactt ... ctgttcccagATTCTTTGGCGTGGCCAGGAAAAGGTTATGGCAGATGTTGCTTCTCCAGAT
EST: gi|207726960|gb|GD702912.1|GD702912
EST:     CGTATTATATGGATGCAACAAGGGCAAAGGAATTTGGGGTCATTGACAGA                         ATTCTTTGGCGTGGCCAGGAAAAGGTTATGGCAGATGTTGCTTCTCCAGAT
genomic: CGTATTATATGGATGCAACAAGGGCAAAGGAATTTGGGGTCATTGACAGAgtaagtactt ... ctgttcccagATTCTTTGGCGTGGCCAGGAAAAGGTTATGGCAGATGTTGCTTCTCCAGAT
EST: gi|193336968|gb|FK302404.1|FK302404
EST:     CGTATTATATGGATGCAACAAGGGCAAAGGAATTTGGGGTCATTGACAGA                         ATTCTTTGGCGTGGCCAGGAAAAGGTTATGGCAGATGTTGCTTCTCCAGAT
genomic: CGTATTATATGGATGCAACAAGGGCAAAGGAATTTGGGGTCATTGACAGAgtaagtactt ... ctgttcccagATTCTTTGGCGTGGCCAGGAAAAGGTTATGGCAGATGTTGCTTCTCCAGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCAGAGGAAACAGTTGCTAATGTGATGAAGAGACCGTATTATATGGATGCAACAAGGGCAAAGGAATTTGGGGTCATTGACAGAgtaagtacttatgtatatagtgtgtcttcttcagtctctatgctcttgaacatgcattgctgacctaacctatgctggaactgttcccag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA