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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCCCTGAAGATTGTGCACTTGCCATAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAGgttctgaatttgtctttgtgtagctagggtctttcgttctttctattgtaatgatgtgcacatgatttactaatgatcacaacttgacag

Basic information

species Glycine max
transcript GLYMA03G39530.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G39530.1 (Glycine max), 5'ss of exon 8
lower sequence: AT3G05520.1 (Arabidopsis thaliana), 5'ss of exon 8
GCCCCTGAAGATTGTGCACTTGCCATAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAGgttctgaatttgtc-tttgtgtagctagggtctttc-gttctttctattgt-aatgatgt-gcacatgatttactaatgatcacaacttgacag
 |  | || || || ||  |||||||| | |  |||||  | ||||||||||||||||||||||| ||||| |||||||  |||| |    |  | || || |    ||||  ||   | | |||| |||   || | |  |||   | | || |              
TCTGCAGATGACTGCGCGATTGCCATAGCCAATATTATCAGGCACCATGAAACAGAGTACCTTGCATCTCTAGAGgttcccaattagcaactcatttatctcgtacttttccatttcatgtgttgttaatctcgttgtatctgacccaatcattag-------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19453054|gb|BM954464.1|BM954464
EST:     TAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAG                         GCATCATATCTAAACCTTCCTGATTCTACTTTCAAG
genomic: TAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAGgttctgaatt ... aacttgacagGCATCATATCTAAACCTTCCTGATTCTACTTTCAAG
EST: gi|192303326|gb|FG995620.1|FG995620
EST:     TAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAG                         GCATCATATCTAAACCTTCCTGATTCTACTTTCAAG
genomic: TAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAGgttctgaatt ... aacttgacagGCATCATATCTAAACCTTCCTGATTCTACTTTCAAG
EST: gi|37997277|gb|CF808866.1|CF808866
EST:     TAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAG                         GCATCATATCTAAACCTTCCTGATTCTACTTTCAAG
genomic: TAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAGgttctgaatt ... aacttgacagGCATCATATCTAAACCTTCCTGATTCTACTTTCAAG
EST: gi|31311467|gb|CD396670.1|CD396670
EST:     TAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAG                         GCATCATATCTAAACCTTCCTGATTCTACTTTCAAG
genomic: TAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAGgttctgaatt ... aacttgacagGCATCATATCTAAACCTTCCTGATTCTACTTTCAAG
EST: gi|37996140|gb|CF807729.1|CF807729
EST:     TAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAG                         GCATCATATCTAAACCTTCCTGANTTCTACTTTCAAG
genomic: TAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAGgttctgaatt ... aacttgacagGCATCATATCTAAACCTTCCTGA-TTCTACTTTCAAG
EST: gi|298184842|gb|HO030055.1|HO030055
EST:     TAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAG                         GCATCATATCTAAACCTTCCTGATTCTACTTTCAAG
genomic: TAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAGgttctgaatt ... aacttgacagGCATCATATCTAAACCTTCCTGATTCTACTTTCAAG
EST: gi|19269660|gb|BM885916.1|BM885916
EST:     TAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAG                         GCATCATATCTAAACCTTCCTGATTCTACTTTCAAG
genomic: TAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAGgttctgaatt ... aacttgacagGCATCATATCTAAACCTTCCTGATTCTACTTTCAAG
EST: gi|302141262|gb|HO212138.1|HO212138
EST:     CCTTGCTTCTCTTGAG                         GCATCATATCTAAACCTTCCTGATTCTACTTTCAAG
genomic: CCTTGCTTCTCTTGAGgttctgaatt ... aacttgacagGCATCATATCTAAACCTTCCTGATTCTACTTTCAAG
EST: gi|9987385|gb|BE661493.1|BE661493
EST:     TAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAG                         GCATCATATCTNAACCTTTCTGAATCTACTTTCAAG
genomic: TAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAGgttctgaatt ... aacttgacagGCATCATATCTAAACCTTCCTGATTCTACTTTCAAG
EST: gi|58022852|gb|CX709593.1|CX709593
EST:     TAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAG                         GCATCATATCTAAACCTTCCTGATTCTACTTTCAAG
genomic: TAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAGgttctgaatt ... aacttgacagGCATCATATCTAAACCTTCCTGATTCTACTTTCAAG
EST: gi|58019780|gb|CX706522.1|CX706522
EST:     TAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAG                         GCATCATATCTAAACCTTCCTGATTCTACTTTCAAG
genomic: TAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAGgttctgaatt ... aacttgacagGCATCATATCTAAACCTTCCTGATTCTACTTTCAAG
EST: gi|10231910|gb|BE800798.1|BE800798
EST:     TAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAG                         GCATGATATCTGAACCTTCCTGATTCT
genomic: TAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAGgttctgaatt ... aacttgacagGCATCATATCTAAACCTTCCTGATTCT
EST: gi|18711075|gb|BM522558.1|BM522558
EST:     TAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAG                         GCATCATATCTAAACCTTCCTGATTCTACTTTCAAG
genomic: TAACAAGCATTATTCGTCACCATGAAACAGAGTACCTTGCTTCTCTTGAGgttctgaatt ... aacttgacagGCATCATATCTAAACCTTCCTGATTCTACTTTCAAG