Sequence
atgc intronic sequence ATGC exonic sequenceGCACCCTTCCCCTTCAGTGCTTATTCCTGCTCTTCGTACTGTTGGAAATATTGTTACAGGAGATGATTTGCAGACACAGgtattaagttcttcatggctctttttttaacttcttaatatacaggttactatatgtcactagctattctgtgttaagggaaatcgtaatagtgatagta...
Basic information
species | Glycine max |
transcript | GLYMA03G39210.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G39210.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os01g14950.1 (Oryza sativa), 5'ss of exon 7
GCACCCTTCCCCTTCAGTGCTTATTCCTGCTCTTCGTACTGTTGGAAATATTGTTACAGGAGATGATTTGCAGACACAGgtattaagttcttcatggctctttttttaacttcttaatatacaggttactatatgtcactagctattctgtgttaagggaaatcgtaatagtgatagta-
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CCATCCATCACCTTCAGTGCTTATACCCGCACTACGAACTGTTGGAAATATTGTAACTGGAGATGACGCGCAAACTCAGgtattgtgttgattttttgcatctctatatctgacagattt-tgtatcaattgatatcaactactaagactcatgaatcttgagcttaatatttagaggtt
upper sequence: GLYMA03G39210.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G088231_T01 (Zea mays), 5'ss of exon 7
GCACCCTTCCCCTTCAGTGCTTATTCCTGCTCTTCGTACTGTTGGAAATATTGTTACAGGAGATGATTTGCAGACACAGgt---attaagttcttcatggctctttttttaacttcttaatatacaggttactatatgtcactagctattctgtgttaagggaaatcgtaatagtgatagta
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CCATCCATCACCATCGGTGCTTATACCTGCTCTACGAACTGTTGGGAATATTGTCACTGGAGATGATTTGCAAACTCAGgtgggatttcaagtttggtggctttcttctatgtccggcaaactttatgcaattagttatcagagctaaatttgtgtggatatgattatttattatgggt---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|298180071|gb|HO025286.1|HO025286EST: CTCTTCGTACTGTTGGAAATATTGTTACAGGAGATGATTTGCAGACACAG GTCATCATTAACCATCAAACTCTCCCACGTCTTCTGAATATCTTGACTAAT
genomic: CTCTTCGTACTGTTGGAAATATTGTTACAGGAGATGATTTGCAGACACAGgtattaagtt ... tcttgcttagGTCATCATTAACCATCAAGCTCTCCCACGTCTTCTGAATATCTTGACTAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCACCCTTCCCCTTCAGTGCTTATTCCTGCTCTTCGTACTGTTGGAAATATTGTTACAGGAGATGATTTGCAGACACAGgtattaagttcttcatggctctttttttaacttcttaatatacaggttactatatgtcactagctattctgtgttaagggaaatcgtaatagtgatagta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG