1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GAGTGAACGAATGGGTTGTCACTGAAAAACTTGGTGATGCTCTCAAGGCTAAAGCAGGAGGTAAAGCACCTAAAAAGCCTCGATTCAGGATTGGAGACAGgtatgaataagcattcttggcttagttatttgataactttcactgatttctaagtagtaagttttatatgattttgggctgctaacctacattggttgtttttgtgttcaaatatcattag
species | Glycine max |
transcript | GLYMA03G34800.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AAAGCAGGAGGTAAAGCACCTAAAAAGCCTCGATTCAGGATTGGAGACAG GATTCACTTGTTGGAACTTGGTGTCGCATTCTACCTCTTCTTTTGTGGCTGEST: gi|6481594|gb|AW200865.1|AW200865
genomic: AAAGCAGGAGGTAAAGCACCTAAAAAGCCTCGATTCAGGATTGGAGACAGgtatgaataa ... atatcattagGATTCACTTGTTGGAACTTGGTGTCGCATTCTACCTCTTCTTTTGTGGCTG
EST: AAAGCAGGAGGTAAAGCACCTAAAAAGCCTCGATTCAGGATTGGAGACAG GATTCACTTGTTGGAACTTGGTGTCGCATTCTACCTCTTCTTTTGTGGCTGEST: gi|193384740|gb|FK351082.1|FK351082
genomic: AAAGCAGGAGGTAAAGCACCTAAAAAGCCTCGATTCAGGATTGGAGACAGgtatgaataa ... atatcattagGATTCACTTGTTGGAACTTGGTGTCGCATTCTACCTCTTCTTTTGTGGCTG
EST: AAAGCAGGAGGTAAAGCACCTAAAAAGCCTCGATTCAGGATTGGAGACAG GATTCACTTGTTGGAACTTGGTGTCGCATTCTACCTCTTCTTTTGTGGCTGEST: gi|51336435|gb|CO980301.1|CO980301
genomic: AAAGCAGGAGGTAAAGCACCTAAAAAGCCTCGATTCAGGATTGGAGACAGgtatgaataa ... atatcattagGATTCACTTGTTGGAACTTGGTGTCGCATTCTACCTCTTCTTTTGTGGCTG
EST: AAAGCAGGAGGTAAAGCACCTAAAAAGCCTCGATTCAGGATTGGAGACAG GATTCACTTGTTGGAACTTGGTGTCGCATTCTACCTCTTCTTTTGTGGCTGEST: gi|57574731|gb|CX547706.1|CX547706
genomic: AAAGCAGGAGGTAAAGCACCTAAAAAGCCTCGATTCAGGATTGGAGACAGgtatgaataa ... atatcattagGATTCACTTGTTGGAACTTGGTGTCGCATTCTACCTCTTCTTTTGTGGCTG
EST: AAAGCAGGAGGTAAAGCACCTAAAAAGCCTCGATTCAGGATTGGAGACAG GATTCACTTGTTGGAACTTGGTGTCGCATTCTACCTCTTCTTTTGTGGCTG
genomic: AAAGCAGGAGGTAAAGCACCTAAAAAGCCTCGATTCAGGATTGGAGACAGgtatgaataa ... atatcattagGATTCACTTGTTGGAACTTGGTGTCGCATTCTACCTCTTCTTTTGTGGCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGTGAACGAATGGGTTGTCACTGAAAAACTTGGTGATGCTCTCAAGGCTAAAGCAGGAGGTAAAGCACCTAAAAAGCCTCGATTCAGGATTGGAGACAGgtatgaataagcattcttggcttagttatttgataactttcactgatttctaagtagtaagttttatatgattttgggctgctaacctacattggttgtttttgtgttcaaatatcattag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA