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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTTGTCAGTGAATGTGGTCTTCTTGAGGCTGGCCTGGACTATGGTGGATTATCTAAAGAGTTTCTGACTGACATATCAAAATCAGCATTTTCTCCTGAgtaagtttgacacgctattttgtactttcttgcttttatttcttggtcattgcctctttcaggagtgactttataaactgacaccttttccttttgtcttag

Basic information

species Glycine max
transcript GLYMA03G34650.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G34650.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G461948_T01 (Zea mays), 5'ss of exon 7
CATTTGTCAGTGAATGTGGTCTTCTTGAGGCTGGCCTGGACTATGGTGGATTATCTAAAGAGTTTCTGACTGACATATCAAAATCAGCATTTTCTCCTGAgtaagtttgacacgctattttgtactttcttg-cttttattt----------cttggtcattgcctctttcagga--gtgactttataaactgacaccttttccttttgtcttag--------
||||||| |||||||| ||||||| ||| |||||  |||||||||||||  | || |||||||| || || ||  | ||||| || || |||  ||| |||||||  |  |     | |||   ||||     |||||||            || |    |    || |||| ||  | || |||    | |     ||| |  || || |            
CATTTGTGAGTGAATGCGGTCTTCCTGAAGCTGGTTTGGACTATGGTGGTCTGTCAAAAGAGTTCCTAACAGATCTCTCAAAGTCCGCTTTTAGTCCAGAgtaagcataccgttaaacttttagcttttaaatcttttatcaaaaatgaagactggagagtactttcattcatgaaggcgattttgctgaatattttcttctatttctgacaacactcaatag

upper sequence: GLYMA03G34650.1 (Glycine max), 5'ss of exon 8
lower sequence: AT3G53090.2 (Arabidopsis thaliana), 5'ss of exon 7
CATTTGTCAGTGAATGTGGTCTTCTTGAGGCTGGCCTGGACTATGGTGGATTATCTAAAGAGTTTCTGACTGACATATCAAAATCAGCATTTTCTCCTGAgtaagtttgacacgctattttgtactttcttgcttttatttcttggtcattgcctctttcag--gagtgacttt-----ataaactgacaccttttccttttgtcttag-------
| ||||| | ||||| ||| |||| |||||||||||| |||||||||||  | || ||||||||| ||||||||||| ||||| |||| ||| || ||||||||| |     |  ||| |  | | | |||  || || |  ||| |  || | | || |||  || | | |||     ||  | ||  |  |      ||| ||||         
CGTTTGTGAATGAATCTGGCCTTCCTGAGGCTGGCCTAGACTATGGTGGGCTTTCAAAAGAGTTTTTGACTGACATAACAAAAGCAGCTTTTGCTACTGAgtaagctc--ttctgtatgt-atgcatactttattctagtctttg-ttgttacttgttccagtggattaagttttatttatttattggtatgtccattatttttcttttccaaaag

upper sequence: GLYMA03G34650.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv08s0007g04290.t01 (Vitis vinifera), 5'ss of exon 7
CATTTGTCAGTGAATGTGGTCTTCTTGAGGCTGGCCTGGACTATGGTGGATTATCTAAAGAGTTTCTGACTGACATATCAAAATCAGCATTTTCTCCTGAgtaagtttgacacgctattttgtactttcttgcttttatttcttggtcattgcctctttcaggagtgactttataaactgacaccttttccttttgtcttag
||||| | ||||||||||| ||||  |||||||| ||||||||||| || ||||  ||||||||  | ||||| ||| ||||| |||| ||| ||||||||||||||| | |       ||| | ||   |   ||| ||   |||| ||   | |||| ||||      |||||   | |    ||||  | |||||||||
CATTTATTAGTGAATGTGGCCTTCCAGAGGCTGGTCTGGACTATGGCGGCTTATTCAAAGAGTTCTTAACTGATATAGCAAAAGCAGCCTTTGCTCCTGAgtaagtttaaga-------ttgcaattatatcaatttcttgtatggttatctgcgcttt-agga------ttatag--ttatttattttattgttgtcttag