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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTATTCTCCCTTGCTGAAAAAATTGGTTACTCTAAATGGCTTCAATTTGATGCATCAGTTGTTCGAGGTCTTGCTTACTACACTGGCATTGTATTTGAGgttagaatttcctggttaaaactaaataaatgttatagtttacatgaatataaatagtttatgggttagattagtagcggaagccatgaaaatcctagga...

Basic information

species Glycine max
transcript GLYMA03G34050.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G34050.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os02g51830.1 (Oryza sativa), 5'ss of exon 8
GCTATTCTCCCTTGCTGAAAAAATTGGTTACTCTAAATGGCTTCAATTTGATGCATCAGTTGTTCGAGGTCTTGCTTACTACACTGGCATTGTATTTGAGgttagaatttcctggttaaaactaaataaatgttatagtttacatgaatata-aatagtttatgggttagattagtagcggaagccatgaaaatcctagga
| | |||||  |||||||  |    |||||  || | ||| ||   ||||||||||| |||||||| || ||||| |||||||| || ||||| |||||||||    ||     || |        || || |     | |   ||  |||  || | ||||| || |   | |  |  |  |    | || |   |  | 
GTTGTTCTCGTTTGCTGAGCAGTACGGTTATGCTGATTGGATTTGTTTTGATGCATCTGTTGTTCGTGGCCTTGCATACTACACAGGAATTGTTTTTGAGgttgttgttgaagcgtcaccttatgttacatatatctatattattgtttattcaacaatttatagggttactaacaaaagtgacaagtaaagaatttgag-

upper sequence: GLYMA03G34050.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G158228_T01 (Zea mays), 5'ss of exon 7
GCTATTCTCCCTTGCTGAAAAAATTGGTTACTCTAAATGGCTTCAATTTGATGCATCAGTTGTTCGAGGTCTTGCTTACTACACTGGCATTGTATTTGAGgttagaatttcctggttaaaactaaataaatgttatagtttacatgaatataaatagtttatgggttagattagtagcggaagccatgaaaatcctagga-----
 || |||||| |||| ||  ||  ||||||  || | ||| ||   |||||||||||||| || || || ||||| |||||||| || |||||||||||||||    |   |   |      ||  | ||   ||        |     | ||  || | | |||  |  | |  |       |    || ||  |   |     
ACTCTTCTCCTTTGCGGAGCAATATGGTTATGCTGATTGGATTTGTTTTGATGCATCAGTGGTCCGTGGCCTTGCATACTACACAGGAATTGTATTTGAGgttgctttcagcatctctttcttatgtcaacagtaggaccagta-----acaagcagataaggggccatgtcatcaaactgcacatgaaacattattaaataaga

upper sequence: GLYMA03G34050.1 (Glycine max), 5'ss of exon 8
lower sequence: AT3G46100.1 (Arabidopsis thaliana), 5'ss of exon 8
GCTATTCTCCCTTGCTGAAAAAATTGGTTACTCTAAATGGCTTCAATTTGATGCATCAGTTGTTCGAGGTCTTGCTTACTACACTGGCATTGTATTTGAGgttagaatttcctggttaaaactaaataaatgttatagtttacatgaatataaatagtttatgggttagattagtagcggaagccatgaaaatcctagga
 || ||||| |||||||||||  ||||||| ||  | ||| | || ||||||||||| ||||| || ||||||||||| |||||||| || || || ||||||||| ||||    |       | ||  ||  |    | ||  |   ||  |  |  | || |   |  ||  | | |  ||                 
ACTCTTCTCACTTGCTGAAAAGTTTGGTTATTCAGAGTGGATACAGTTTGATGCATCTGTTGTGCGCGGTCTTGCTTATTACACTGGTATCGTCTTCGAGgttagattttctccat-------acatggatactggtctatagttttgtaatagcaactgatagacaacgtt--ttgtgatag-----------------

upper sequence: GLYMA03G34050.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv08s0040g01360.t01 (Vitis vinifera), 5'ss of exon 8
GCTATTCTCCCTTGCTGAAAAAATTGGTTACTCTAAATGGCTTCAATTTGATGCATCAGTTGTTCGAGGTCTTGCTTACTACACTGGCATTGTATTTGAGgttagaatttcctggttaaa-----actaaataaatgttatagtttacatgaatat--aaatagtttatgggttagattagtagcggaagccatgaaaatcctagga
 || |||||||||||||||||  |||| |||||| | ||| ||||||| |||||||| ||||| || || ||||| || || ||||| |||||||||||||||||  ||| ||  ||| |     ||| | | |  ||| ||    || |   |    ||| |   |   |   | || ||| |  ||       || |        
ACTGTTCTCCCTTGCTGAAAAGTTTGGCTACTCTGAGTGGATTCAATTCGATGCATCTGTTGTCCGTGGCCTTGCCTATTATACTGGAATTGTATTTGAGgttagg-tttgctatttatatctttactgattgagggttttatgacaccttttttctgaaacatggtgctgtccacatgagttgatgagttagcaaatagg------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14011077|gb|BG725999.1|BG725999
EST:     ATGCATCAGTTGTTCGAGGTCTTGCTTACTACACTGGCATTGTATTTGAG                         GGTTTTGACCGAGAAGGAAAGCTGCGAGCTATCTGTGGTGGTGGTCGATAT
genomic: ATGCATCAGTTGTTCGAGGTCTTGCTTACTACACTGGCATTGTATTTGAGgttagaattt ... tcttcagtagGGTTTTGACCGAGAAGGAAAGCTGCGAGCTATCTGTGGTGGTGGTCGATAT
EST: gi|7588625|gb|AW704417.1|AW704417
EST:     ATGCATCAGTTGTTCGAGGTCTTGCTTACTACACTGGCATTGTATTTGAG                         GGTTTTGACCGAGAAGGAAAGCTGCGAGCTATCTGTGGTGGTGGTCGATAT
genomic: ATGCATCAGTTGTTCGAGGTCTTGCTTACTACACTGGCATTGTATTTGAGgttagaattt ... tcttcagtagGGTTTTGACCGAGAAGGAAAGCTGCGAGCTATCTGTGGTGGTGGTCGATAT