1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TTGAAAAGGCCAAGTATATTTATATTGCTGGGTTTTTCCTCACTGTATCACCAGATTCCATCCAGCTAGTTGCTGAGCATGCTGCTGCAAATAACAAGgttaaatatgattggaaaattgctgcttcctattaaatgctgtttctgatactttattttattcctgtatgcag
species | Glycine max |
transcript | GLYMA03G33910.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CACCAGATTCCATCCAGCTAGTTGCTGAGCATGCTGCTGCAAATAACATG ATCTTCTCCATGAACCTTTCTGCCCCCTTTATCTGCCGAGTTTTA-AGG-AEST: gi|254342531|gb|GR858693.1|GR858693
genomic: CACCAGATTCCATCCAGCTAGTTGCTGAGCATGCTGCTGCAAATAACAAGgttaaatatg ... ctgtatgcagATCTTCTCAATGAACCTTTCTGCCCCTTTTATCTGC-GAGTTTTTCAGGGA
EST: CACCAGATTCCATCCAGCTAGTTGCTGAGCATGCTGCTGCAAATAACAAG ATCTTCTCAATGAACCTTTCTGCCCCTTTTATCTGCGAGTTTTTCAGGGATEST: gi|254342530|gb|GR858692.1|GR858692
genomic: CACCAGATTCCATCCAGCTAGTTGCTGAGCATGCTGCTGCAAATAACAAGgttaaatatg ... ctgtatgcagATCTTCTCAATGAACCTTTCTGCCCCTTTTATCTGCGAGTTTTTCAGGGAT
EST: CACCAGATTCCATCCAGCTAGTTGCTGAGCATGCTGCTGCAAATAACAAG ATCTTCTCAATGAACCTTTCTGCCCCTTTTATCTGCGAGTTTTTCAGGGATEST: gi|6482402|gb|AW201663.1|AW201663
genomic: CACCAGATTCCATCCAGCTAGTTGCTGAGCATGCTGCTGCAAATAACAAGgttaaatatg ... ctgtatgcagATCTTCTCAATGAACCTTTCTGCCCCTTTTATCTGCGAGTTTTTCAGGGAT
EST: CACCAGATTCCATCCAGCTAGTTGCTGAGCATGCTGCTGCAAATAACAAG ATCTTCTCAATGAACCTTTCTGCCCCTTTTATCTGCGAGTTTTTCAGGGAT
genomic: CACCAGATTCCATCCAGCTAGTTGCTGAGCATGCTGCTGCAAATAACAAGgttaaatatg ... ctgtatgcagATCTTCTCAATGAACCTTTCTGCCCCTTTTATCTGCGAGTTTTTCAGGGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGAAAAGGCCAAGTATATTTATATTGCTGGGTTTTTCCTCACTGTATCACCAGATTCCATCCAGCTAGTTGCTGAGCATGCTGCTGCAAATAACAAGgttaaatatgattggaaaattgctgcttcctattaaatgctgtttctgatactttattttattcctgtatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC