Sequence
atgc intronic sequence ATGC exonic sequenceATTCAAGGTTATGAGACACATTCGTTTAAGTCCAACTTTGATTCTTGGCCATCAGGATCTGCTACTACTGGTGCTGATGAAGGAAGAGGAAAAGTTGCAGgtggacgttatttcttctcacttgtaatttggcttggattttttatcaatcattcataagaatgttattttttttgtactgtcag
Basic information
species | Glycine max |
transcript | GLYMA03G29280.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G29280.1 (Glycine max), 5'ss of exon 8
lower sequence: AT3G57410.1 (Arabidopsis thaliana), 5'ss of exon 10
ATTCAAGGTTATGAGACACATTCGTTTAAGTCCAACTTTGATTCTTGGCCATCAGGATCTGCTACTACTGGTGCTGATGAAGGAAGAGGAAAAGTTGCAGgtggacgttatttc----ttctcacttgtaatttggcttg-----gattttttatcaatcattcataagaatgttattttttttgtactgtcag
||||||||||||||| | ||||| || ||||| |||||||| |||||||||||||| || || ||| ||| | ||| |||||| |||||||||| || ||| | || || ||| | || | | | ||| | ||||| | | | | | | || | |||| |
ATTCAAGGTTATGAGCCCCATTCTTTCAAGTCTAACTTTGACTCTTGGCCATCAGGCTCGGCAACTCCTGCTAATGAAGAAGGACGAGGAAAAGTCGCTGgtaaagattgctttgatactctaaattattaataaaacaatgaaagatctcttatccctgacttactttggtacttttcctattgtctag----
upper sequence: GLYMA03G29280.1 (Glycine max), 5'ss of exon 8
lower sequence: AT2G41740.1 (Arabidopsis thaliana), 5'ss of exon 9
ATTCAAGGTTATGAGACACATTCGTTTAAGTCCAACTTTGATTCTTGGCCATCAGGATCTGCTACTACTGGTGCTGATGAAGGAAGAGGAAAAGTTGCAGgtggacgttatttcttctcacttgtaatttggcttggattttttatcaatcattca--taagaatg-ttattttttttgtactgtcag-----
|| |||||||||||| | ||||| || ||||| |||||||| |||||||||||||| || || ||| ||||| || |||||| |||||||||| || ||| | | || | | ||| | | | | || | || | | || || |||||| || | |
ATCCAAGGTTATGAGTCCCATTCTTTCAAGTCTAACTTTGACTCTTGGCCATCAGGCTCGGCCACTCCTGGTAACGAAGAAGGACGAGGAAAAGTCGCTGgtaaaa--caccactatgaaactcaaatctttatagaaaacattgacggtcttgtagccctgactgactattttcaatgccccatttctctag
upper sequence: GLYMA03G29280.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv08s0007g08690.t01 (Vitis vinifera), 5'ss of exon 8
ATTCAAGGTTATGAGACACATTCGTTTAAGTCCAACTTTGATTCTTGGCCATCAGGATCTGCTACTACTGGTGCTGATGAAGGAAGAGGAAAAGTTGCAGgtggacgttatttcttctcacttgtaatttggcttggattttttatcaatcattcataagaatgttattttttttgtactgtcag
|||||||| |||||||||||||| || |||||||||||||||||||||||||||||||| || | ||||||||| ||||||||||||||||| |||||| | || ||| || ||| || | |||||| | |||| ||| ||| | | | | ||| | ||
ATTCAAGGGTATGAGACACATTCATTCAAGTCCAACTTTGATTCTTGGCCATCAGGATCAGCAGCAGGTGGTGCTGAGGAAGGAAGAGGAAAAGTAGCAGgtaatgaccactt----tcatacttagtttaactggagttttttgggtaacattattaa--ttgtcaatctgtgggtaattgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193660789|gb|FK600815.1|FK600815EST: ATCAGGATCTGCTACTACTGGTGCTGATGAAGGAAGAGGAAAAGTTGCAG CTTTGCTTAAGCAACAAGGTA
genomic: ATCAGGATCTGCTACTACTGGTGCTGATGAAGGAAGAGGAAAAGTTGCAGgtggacgtta ... gtactgtcagCTTTGCTTAAGCAACAAGGTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTCAAGGTTATGAGACACATTCGTTTAAGTCCAACTTTGATTCTTGGCCATCAGGATCTGCTACTACTGGTGCTGATGAAGGAAGAGGAAAAGTTGCAGgtggacgttatttcttctcacttgtaatttggcttggattttttatcaatcattcataagaatgttattttttttgtactgtcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA