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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGCAGCTGTTACTGCTTTAGAACTAGCTTCTAAGGCATTGTCAATAAGTTTATACTCAGAAAAATTGCTTCAAATGAAGGCAGAGGCTCTATGTTTGgtattttctactctaattatttgctccactcatctttatgcatttttattctgttttttttttgttcttgttttgcttaattaatttgtattaggggaataaaaggtgctgtttattattgtaatgtcttgcag

Basic information

species Glycine max
transcript GLYMA03G28930.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G28930.1 (Glycine max), 5'ss of exon 8
lower sequence: AT2G41520.2 (Arabidopsis thaliana), 5'ss of exon 5
TGATGCAGCTGTTACTGCTTTAGAACTAGCTTCTAAGGCATTGTCAATAAGTTTATACTCAGAAAAATTGCTTCAAATGAAGGCAGAGGCTCTATGTTTGgtattttctactctaattatttgctccactcatctttatgcatttttattctgttttttttttgttcttgttttgcttaattaatt-tgtattaggggaataaaaggtgctgtttattattgtaatgtcttgcag
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TGATGGCGCATCTGACGCATTGGTTCCAATTGCCAATGCCTTATCAATTAGTTCATGCTCAGATAAATTGCTTCAAATGAAGGCCGAGGCCCTATTTATGgtgagt--------agcctttcgttt---tcacttctcaaaatttaaactttgctttcagt--gggcatgatcttctatgtcaatcctgcag-------------------------------------------