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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTCGAGATGCTGATGGCCGACCTGATGAAGAAGTGGCTGACGAATATTGGGCAAATCATATTGCTCGTAATGATTCCATAATTGTTGATGTATGCCAGgtgagtcaaatcagtaatttgtaaatttttgtaatgtgtcatagactcagttaatggcttaatatcaactattcagaaacagctctaactagcatagtta...

Basic information

species Glycine max
transcript GLYMA03G27790.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G27790.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G451357_T01 (Zea mays), 5'ss of exon 6
ATCTCGAGATGCTGATGGCCGACCTGATGAAGAAGTGGCTGACGAATATTGGGCAAATCATATTGCTCGTAATGATTCCATAATTGTTGATGTATGCCAGgtgagtc--aaatcagtaatttgtaaatttttgtaatgtgtcatagactcagttaatggcttaatatcaactattcagaaacagctctaactagcatagtta---
 ||  | |||||||||||  || | ||||||||||| || || |||||||||||||||||||||||  | ||| |||| || |||||||||||||||||||| |||   ||| | || | |      | ||  |  ||||    |  ||  |    | | | |||   || ||  ||     |  |   || | |||  ||    
TTCAGGGGATGCTGATGGAAGATCAGATGAAGAAGTTGCAGATGAATATTGGGCAAATCATATTGCCAGAAATAATTCAATCATTGTTGATGTATGCCAGgttagttctaaacctgtgaatcacttgtcttactgttgtg----atgctttggctttagataaatgctaa-tagccattgcaatttgggaccatcatgtttctct

upper sequence: GLYMA03G27790.1 (Glycine max), 5'ss of exon 8
lower sequence: AT2G40930.1 (Arabidopsis thaliana), 5'ss of exon 8
ATCTCGAGATGCTGATGGCCGACCTGATGAAGAAGTGGCTGACGAATATTGGGCAAATCATATTGCTCGTAATGATTCCATAATTGTTGATGTATGCCAGgtgagtcaaatcagtaatttgtaaatttttgtaatgtgtcatagactcagttaatggcttaatatcaactattcagaa-acagctctaactagcat--agtta
 |||||||| || ||||| || |||||||||||||| ||||| || |  |||  ||||||||||||||||||||| || ||||| |||||||| || ||||| ||    ||   |  |||  ||| |       |      |  | |||  | ||||| |   | |   || |   |     | |    || ||||   ||||
TTCTCGAGACGCAGATGGGCGCCCTGATGAAGAAGTTGCTGATGAGTTCTGGAAAAATCATATTGCTCGTAATGACTCAATAATAGTTGATGTTTGTCAGgtcagctgtat--atcttttagaaaatccaacgcttctctgttta-tcaactcatggcattgaaactgatactagtattgtggattaggcttgcatttggtta

upper sequence: GLYMA03G27790.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv00s0174g00150.t01 (Vitis vinifera), 5'ss of exon 8
ATCTCGAGATGCTGATGGCCGACCTGATGAAGAAGTGGCTGACGAATATTGGGCAAATCATATTGCTCGTAATGATTCCATAATTGTTGATGTATGCCAGgtgagtcaaatcagtaatttgtaaatttttgtaatgtgtcatagactcagttaatggcttaatatcaactattcagaaacagctct-aactagcata-gtta----
 ||| |||||||||||||  | |||||||||||||| ||||| ||||||||||||||||| |||||||| |||||||| ||||| |||||||| ||||| || |||   || |  || || |||   ||    ||  ||   |||     |  ||||  |  |||    | ||    | |||   | ||  || ||   | |    
GTCTAGAGATGCTGATGGGAGGCCTGATGAAGAAGTTGCTGATGAATATTGGGCAAATCACATTGCTCGCAATGATTCTATAATAGTTGATGTGTGCCAAgtaagttctataatgaagttttaa--cttcaagatacgttggaga----atatatggtatgctatttttttttttcgatcagtaatcaaagagaatgtatcataaa