1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GCAGAGAGAGATACTACTTCTCTTCACCGTGCTGCAAAATTGCTCATCAATTCTCAGTTGAAAGAGGGTGATTGGCCTCAACAGgtacgtatcaatcctttgatattgataatgtctcttatttaataaacttattgagcaataaatttagttgaactagtaattatgcgttgtacaaaataaa...
species | Glycine max |
transcript | GLYMA03G27660.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TTGAAAGAGGGTGATTGGCCTCAACAG GAACTCACTGGAGTATTCAATAGAACGTGCATGCTGCATTACCCAATGTACEST: gi|105635067|gb|DW247758.1|DW247758
genomic: TTGAAAGAGGGTGATTGGCCTCAACAGgtacgtatca ... cttctactagGAACTCACTGGAGTATTCAATAGAACGTGCATGCTGCATTACCCAATGTAC
EST: CAAAATTGCTCATCAATTCTCAGTTGAAAGAGGGTGATTGGCCTCAACAG GAACTCACTGGAGTATTCAATAGAACGTGCATGCTGCATTACCCAATGTEST: gi|208167657|gb|GD963797.1|GD963797
genomic: CAAAATTGCTCATCAATTCTCAGTTGAAAGAGGGTGATTGGCCTCAACAGgtacgtatca ... cttctactagGAACTCACTGGAGTATTCAATAGAACGTGCATGCTGCATTACCCAATGT
EST: CTCAGTTGAAAGAGGGTGATTGGCCTCAACAG GAACTCACTGGAGTATTCAATAGAACGTGCATGCTGCATTACCCAATGTACEST: gi|209698608|gb|BW656472.1|BW656472
genomic: CTCAGTTGAAAGAGGGTGATTGGCCTCAACAGgtacgtatca ... cttctactagGAACTCACTGGAGTATTCAATAGAACGTGCATGCTGCATTACCCAATGTAC
EST: CAAAATTGCTCATCAATTCTCAGTTGAAAGAGGGTGATTGGCCTCAACAG GAACTCACTGGAGTATTCAATAGAACGTGCATGCTGCATTACCCAATGTAC
genomic: CAAAATTGCTCATCAATTCTCAGTTGAAAGAGGGTGATTGGCCTCAACAGgtacgtatca ... cttctactagGAACTCACTGGAGTATTCAATAGAACGTGCATGCTGCATTACCCAATGTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAGAGAGAGATACTACTTCTCTTCACCGTGCTGCAAAATTGCTCATCAATTCTCAGTTGAAAGAGGGTGATTGGCCTCAACAGgtacgtatcaatcctttgatattgataatgtctcttatttaataaacttattgagcaataaatttagttgaactagtaattatgcgttgtacaaaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG