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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGAAGATTTCCAAAGCAAATGGGCATTTAAGTTATTACAGCGGTATAGAAATACCTACAGAATGTTCAATGACGATGTGCAGgtagaatttcttttatataggataatataatgtcagttatttttgcaggaaactattagtgttctcaggaaatattgttaagttaattcttaattttact...

Basic information

species Glycine max
transcript GLYMA03G24630.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G24630.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G406672_T02 (Zea mays), 5'ss of exon 8
TTTGAAGATTTCCAAAGCAAATGGGCATTTAAGTTATTACAGCGGTATAGAAATACCTACAGAATGTTCAATGACGATGTGCAGgtagaatttcttttatataggataatataatgtcagttatttttgcaggaaactattagtgttctcaggaaatattgttaagttaattcttaattttact----
||||||||||||||||| |||||||| |||| ||| || ||||| || ||||| || ||  | ||||| ||||| ||||| |||||    | |  ||| |  |   |  |      | || | |  |  || |    |   |  || | |  |   | |||| |    | | |  ||| |||      
TTTGAAGATTTCCAAAGTAAATGGGCCTTTAGGTTGTTGCAGCGTTACAGAAAGACTTATCGCATGTTTAATGATGATGTTCAGgtcagttctaatttctgcaaattcgttcc---taagatttgctgtcatgtttgtgccaacgtcccctagtttt-ttgtgataccattgcacaatattatatcaa

upper sequence: GLYMA03G24630.1 (Glycine max), 5'ss of exon 8
lower sequence: AT2G13560.1 (Arabidopsis thaliana), 5'ss of exon 8
TTTGAAGATTTCCAAAGCAAATGGGCATTTAAGTTATTACAGCGGTATAGAAATACCTACAGAATGTTCAATGACGATGTGCAGgtagaatttcttttatataggataatataatgtcagttatttttgcagga-aactattagtgttctcaggaaatattgttaagttaattcttaa---ttttact--
||||| |||||||| ||||| ||||| || || ||||| ||| ||||||||   |||||| ||||||||||||| ||||| ||||||     ||||     |  ||    |  ||    || |   ||  |    || ||||  | |  |   | | |||| |||   || || |  |   ||||| |  
TTTGAGGATTTCCAGAGCAAGTGGGCTTTCAAATTATTGCAGAGGTATAGATGCACCTACCGAATGTTCAATGATGATGTCCAGgtaatgagtcttccgccttaga----acgattcttgtgaagattaaatactaattatttatttatttctgcagtattttta--ctatttttagagcattttagtca

upper sequence: GLYMA03G24630.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv15s0021g00500.t01 (Vitis vinifera), 5'ss of exon 8
TTTGAAGATTTCCAAAGCAAATGGGCATTTAAGTTATTACAGCGGTATAGAAATACCTACAGAATGTTCAATGACGATGTGCAGgtagaatttcttttatataggataatat--aatgtcagttatttttgcaggaaactattagtg-ttctcaggaaatattgttaagttaattcttaattttact
|||||||||||||||||||| ||||| ||||||||||| ||||| ||||||| ||||||||||||||| || || ||||| ||||| |||||||||||||      |  ||    ||     ||| |||||  |   ||| | | |  || ||   | | | |  |   ||   | |  |   | ||
TTTGAAGATTTCCAAAGCAAGTGGGCCTTTAAGTTATTGCAGCGTTATAGAAGTACCTACAGAATGTTTAACGATGATGTACAGgt-gaatttcttttattgctactcgtaatggattcttattaattttggggtgtactgtaatttcttttctatagaaactaatc--ttgtatttagaaccttct

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19270517|gb|BM886773.1|BM886773
EST:     TATTACAGCGGTATAGAAATACCTACAGAATGTTCAATGACGATGTGCAG                         GGAACAGCTGGAGTTGCAATTGCTGGACTTCTAGGTGCTGTACGGGCGCAA
genomic: TATTACAGCGGTATAGAAATACCTACAGAATGTTCAATGACGATGTGCAGgtagaatttc ... ctccacgcagGGAACAGCTGGAGTTGCAATTGCTGGACTTCTAGGTGCTGTACGGGCGCAA
EST: gi|9264573|gb|BE352720.1|BE352720
EST:     TATTACAGCGGTATAGAAATACCTACAGAATGTTCAATGACGATGTGCAG                         GGAACAGCTGGAGTTGCAATTGCTGGACTTCTAGGTGCTGTACGGGCGCAA
genomic: TATTACAGCGGTATAGAAATACCTACAGAATGTTCAATGACGATGTGCAGgtagaatttc ... ctccacgcagGGAACAGCTGGAGTTGCAATTGCTGGACTTCTAGGTGCTGTACGGGCGCAA
EST: gi|19345893|gb|BM890773.1|BM890773
EST:     TATTACAGCGGTATAGAAATACCTACAGAATGTTCAATGACGATGTGCAG                         GGAACAGCTGGAGTTGCAATTGCTGGACTTCTAGGTGCTGTACGGGCGCAA
genomic: TATTACAGCGGTATAGAAATACCTACAGAATGTTCAATGACGATGTGCAGgtagaatttc ... ctccacgcagGGAACAGCTGGAGTTGCAATTGCTGGACTTCTAGGTGCTGTACGGGCGCAA
EST: gi|13788373|gb|BG650965.1|BG650965
EST:     TATTACAGCGGTATAGAAATACCTACAGAATGTTCAATGACGATGTGCAG                         GGAACAGCTGGAGTTGCAATTGCTGGACTTCTAGGTGCTGTACGGGCGCAA
genomic: TATTACAGCGGTATAGAAATACCTACAGAATGTTCAATGACGATGTGCAGgtagaatttc ... ctccacgcagGGAACAGCTGGAGTTGCAATTGCTGGACTTCTAGGTGCTGTACGGGCGCAA
EST: gi|17519704|gb|BM188746.1|BM188746
EST:     TATTACAGCGGTATAGAAATACCTACAGAATGTTCAATGACGATGTGCAG                         GGAACAGCTGGAGTTGCAATTGCTGGACTTCTAGGTGCTGTACGGGCGCAA
genomic: TATTACAGCGGTATAGAAATACCTACAGAATGTTCAATGACGATGTGCAGgtagaatttc ... ctccacgcagGGAACAGCTGGAGTTGCAATTGCTGGACTTCTAGGTGCTGTACGGGCGCAA