Sequence
atgc intronic sequence ATGC exonic sequenceGACTTGATTGCTGGATTTGACCAAGAAGCAGCTGCTATAGTCATGGCACGCCAAGTCTCCTTCAAAATGGAAACAGAGgttagtgccggatgttttcttcacttttcttatatttggataaatgtatcaaccttctgtgcttgtgtgtgtgtgtggaagggatccacttattgctgaa...
Basic information
species | Glycine max |
transcript | GLYMA03G22740.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G22740.1 (Glycine max), 5'ss of exon 8
lower sequence: AT2G21630.1 (Arabidopsis thaliana), 5'ss of exon 7
GACTTGATTGCTGGATTTGACCAAGAAGCAGCTGCTATAGTCATGGCACGCCAAGTCTCCTTCAAAATGGAAACAGAGgt---tagtgccggatgttttcttcactttt----cttatatttggataaatgt-atcaaccttctgtgcttgtgtgtgtgtgtggaagggatccacttattgctgaa
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GAGTTGAGCAATGGTTTTGACCAAGAAGCAGCTGCTGTAGTAATGGCACGACTTATTTCCTCCAAAATGGAGACTCAGgtactcgatgatgagagctagttagattttttaagctgaatatcggatagatgttatcatgttttagtgtttct---taggtttcttatttcttcttttacag-----
upper sequence: GLYMA03G22740.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv15s0045g00540.t01 (Vitis vinifera), 5'ss of exon 10
GACTTGATTGCTGGATTTGACCAAGAAGCAGCTGCTATAGTCATGGCACGCCAAGTCTCCTTCAAAATGGAAACAGAGgttagtgccggatgttttcttcac-ttttcttatatttggataaatgtatcaaccttctgtgcttgtgtgtgtgtgtggaagggat-ccacttattgctgaa
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GATCTAATTGCTGGATTTGACCAAGAAACAGCAGCTGTAGTAATGGCTCGTGTCGTTTCTTTCAAAATGGAAACTGAGgtaattacaagaaattataaggacatttttttttaatattggaattgttttttataataaatattgtgaaataatacttaatttacaccattccttgttt--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|13789480|gb|BG652071.1|BG652071EST: CAACTGCTATAGTCATGGCACGCCAAGTCTCCTTCAAAATGGAAACAGAG GCCGAATTTGATCCTATCAGATGGTTGGACAAGGCATTGATAAATTTGTGT
genomic: CAGCTGCTATAGTCATGGCACGCCAAGTCTCCTTCAAAATGGAAACAGAGgttagtgccg ... ctggtatcagGCCGAATTTGATCCTATCAGATGGTTGGACAAGGCATTGATAAATTTGTGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GACTTGATTGCTGGATTTGACCAAGAAGCAGCTGCTATAGTCATGGCACGCCAAGTCTCCTTCAAAATGGAAACAGAGgttagtgccggatgttttcttcacttttcttatatttggataaatgtatcaaccttctgtgcttgtgtgtgtgtgtggaagggatccacttattgctgaa
- - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - GCTGCT