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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTTAATGGATAGAACTACCGGGGATGGTGCAGATAGTGCTGAAGATTCAGGGTCTTCACAGTCTTATCCTTCTACATTACCTGGAATTCCTAAGGCATgtaattttttttttcgtttttcatttttag

Basic information

species Glycine max
transcript GLYMA03G18730.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G18730.1 (Glycine max), 5'ss of exon 8
lower sequence: AT3G24870.1 (Arabidopsis thaliana), 5'ss of exon 17
----ACTTTAATGGATAGAACTACCGGGGATGGTGCAGATAGTGCTGAAGATTCAGGGTCTTCACAGTCTTATCCTTCTACATTACCTGGAATTCCTAAGGCAT-
    | | | ||||||| |||| | || ||||| || |||||||| ||||||||||||  ||| ||||||||||| || || || ||||| || || ||||  |     ||  | |    |            || ||  ||  ||||                                     
TAAGATTCTGATGGATAAAACTGCTGGTGATGGGGCTGATAGTGCAGAAGATTCAGGGAATTCTCAGTCTTATCCATCCACTTTGCCTGGCATACCAAAGgtttttctatagctctgagatggtgaacaaagtgtcttctatgcttagactaattaaatgccctggatatgtctgtgatattcag

upper sequence: GLYMA03G18730.1 (Glycine max), 5'ss of exon 8
lower sequence: AT3G24880.1 (Arabidopsis thaliana), 5'ss of exon 16
----ACTTTAATGGATAGAACTACCGGGGATGGTGCAGATAGTGCTGAAGATTCAGGGTCTTCACAGTCTTATCCTTCTACATTACCTGGAATTCCTAAGGCAT-
    | | | ||||||| |||| | || ||||| || |||||||| ||||||||||||  ||| ||||||||||| || || || ||||| || || ||||  |     ||  | |    |            || ||  ||  |||                                       
TAAGATTCTGATGGATAAAACTGCTGGTGATGGGGCTGATAGTGCAGAAGATTCAGGGAATTCTCAGTCTTATCCATCCACTTTGCCTGGCATCCCAAAGgtttttctatagctctgagatggtgaacaaagtgtcttctatgcttaaactaatttaaatgccccggatatgtctgtgatattcag

upper sequence: GLYMA03G18730.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv07s0005g06680.t01 (Vitis vinifera), 5'ss of exon 17
----ACTTTAATGGATAGAACTACCGGGGATGGTGCAGATAGTGCTGAAGATTCAGGGTCTTCACAGTCTTATCCTTCTACATTACCTGGAATTCCTAAGGCATgtaattttttttttcgtttttcattt-ttag---------------------------------------------------------------------------------------------------------
    | |||||||||||| ||| | || ||||| || ||||||||||||||||||||||| || ||| ||||||| |||||||| ||||| ||||| |||| | | | |||  |||| | ||||| |    ||||                                                                                                         
CAAAATTTTAATGGATAGGACTGCTGGTGATGGGGCTGATAGTGCTGAAGATTCAGGGTCATCTCAGCCTTATCCATCTACATTGCCTGGCATTCCAAAGgtaagaattttgattttccctttttgacaagttagaaatagttccttttttatttttttgtattgatgtaaacttgtagactgttgacattgagctaattttagctgtttgaatttatctctgtttctacacttgctcag