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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACCCTTAGCCTTTTATAAAGGGTTCCTCCCAAATTTTGGACGGCTGGGATCTTGGAATGTGATCATGTTTCTAACCTTAGAACAGgtatattttgaatactctgctacatttccatttcctttcttttctgtggtaatcctgtcatgaattaatttatttttattgctttgcatgcttgtttggg...

Basic information

species Glycine max
transcript GLYMA03G14780.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G14780.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv08s0007g01700.t01 (Vitis vinifera), 5'ss of exon 8
GGACCCTTAGCCTTTTATAAAGGGTTCCTCCCAAATTTTGGACGGCTGGGATCTTGGAATGTGATCATGTTTCTAACCTTAGAACAGgtata-ttttgaatactctgctacatttccatttcctttcttttctgtggtaatcctgt-catgaattaatttatttttattgctttgcatgcttgtttggg
|| ||  | ||||| || || || ||  | ||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||| | |||  |||  | || |||  ||      | |||  ||  | ||||  | || | ||     |  |  ||   | |    || |||       ||  
GGGCCTCTTGCCTTCTACAAGGGTTTTATACCAAATTTTGGACGGCTGGGATCTTGGAACGTCATCATGTTTCTGACCTTGGAACAGgtacagtttcaaattgtgtgatactcttatgccccttttaattgttctggtcttgctttgcacatggtggtgcatggctttcaactt-catttccagatgt-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193571595|gb|FK532826.1|FK532826
EST:     CGGCTGGGATCTTGGAATGTGATCATGTTTCTAACCTTAGAACAG                         ACTAAAAAGTTCGTCAAAAGTTTAGAGTCGTCCTGAGGCGAGTTCCCGTTG
genomic: CGGCTGGGATCTTGGAATGTGATCATGTTTCTAACCTTAGAACAGgtatattttg ... tttttgacagACTAAAAAGTTCGTCAAAAGTTTAGAGTCGTCCTGAGGCGAGTTCCCGTTG
EST: gi|254342278|gb|GR853415.1|GR853415
EST:     TTGGACGGCTGGGATCTTGGAATGTGATCATGTTTCTAACCTTAGAACAG                         ACTAAAAAGTTCGTCAAAAGTTTAGAGTCGTCCTGAGGCGAGTTCCCGTTG
genomic: TTGGACGGCTGGGATCTTGGAATGTGATCATGTTTCTAACCTTAGAACAGgtatattttg ... tttttgacagACTAAAAAGTTCGTCAAAAGTTTAGAGTCGTCCTGAGGCGAGTTCCCGTTG
EST: gi|10848284|gb|BF071710.1|BF071710
EST:     TTGGACGGCTGGGATCTTGGAATGTGATCATGTTTCTAACCTTAGAACAG                         ACTAAAAAGTTCGTCAAAAGTTTAGAGTCGTCCTGA
genomic: TTGGACGGCTGGGATCTTGGAATGTGATCATGTTTCTAACCTTAGAACAGgtatattttg ... tttttgacagACTAAAAAGTTCGTCAAAAGTTTAGAGTCGTCCTGA
EST: gi|208148904|gb|GD945004.1|GD945004
EST:     ATCTTGGAATGTGATCATGTTTCTAACCTTAGAACAG                         ACTAAAAAGTTCGTCAAAAGTTTAGAGTCGTCCTGAGGCGAGTTCCCGTTG
genomic: ATCTTGGAATGTGATCATGTTTCTAACCTTAGAACAGgtatattttg ... tttttgacagACTAAAAAGTTCGTCAAAAGTTTAGAGTCGTCCTGAGGCGAGTTCCCGTTG
EST: gi|19053009|gb|BM731676.1|BM731676
EST:     TTGGACGGCTGGGATCTTGGAATGTGATCATGTTTCTAACCTTAGAACAG                         ACTAAAAAGTTCGTCAAAAGTTTAGAGTCGTCCTGAGGCGAGTTCCCGTTG
genomic: TTGGACGGCTGGGATCTTGGAATGTGATCATGTTTCTAACCTTAGAACAGgtatattttg ... tttttgacagACTAAAAAGTTCGTCAAAAGTTTAGAGTCGTCCTGAGGCGAGTTCCCGTTG
EST: gi|22930316|gb|BU547463.1|BU547463
EST:     TTGGACGGCTGGGATCTTGGAATGTGATCATGTTTCTAACCTTAGAACAG                         ACTAAAAAGTTCGTCAAAAGTTTAGAGTCGTCCTGAGGCGAGTTCCCGTTG
genomic: TTGGACGGCTGGGATCTTGGAATGTGATCATGTTTCTAACCTTAGAACAGgtatattttg ... tttttgacagACTAAAAAGTTCGTCAAAAGTTTAGAGTCGTCCTGAGGCGAGTTCCCGTTG
EST: gi|209724657|gb|BW677737.1|BW677737
EST:     TTGGACGGCTGGGATCTTGGAATGTGATCATGTTTCTAACCTTAGAACAG                         ACTAAAAAGTTCGTCAAAAGTTTAGAGTCGTCCTGAGGCGAGTTCCCGTTG
genomic: TTGGACGGCTGGGATCTTGGAATGTGATCATGTTTCTAACCTTAGAACAGgtatattttg ... tttttgacagACTAAAAAGTTCGTCAAAAGTTTAGAGTCGTCCTGAGGCGAGTTCCCGTTG
EST: gi|10255376|gb|BE823142.1|BE823142
EST:     TTGGACGGCTGGGATCTTGGAATGTGATCATGTTTCTAACCTTAGAACAG                         ACTAAAAAGTTCGTCAAAAGTTTAGAGTCGTCCTGAGGCGAGTTCCCGTTG
genomic: TTGGACGGCTGGGATCTTGGAATGTGATCATGTTTCTAACCTTAGAACAGgtatattttg ... tttttgacagACTAAAAAGTTCGTCAAAAGTTTAGAGTCGTCCTGAGGCGAGTTCCCGTTG
EST: gi|7588265|gb|AW704064.1|AW704064
EST:     TTGGACGGCTGGGATCTTGGAATGTGATCATGTTTCTAACCTTAGAACAG                         ACTAAAAAGTTCGTCAAAAGTTTAGAGTCGTCCTGAGGCGAGTTCCCGTTG
genomic: TTGGACGGCTGGGATCTTGGAATGTGATCATGTTTCTAACCTTAGAACAGgtatattttg ... tttttgacagACTAAAAAGTTCGTCAAAAGTTTAGAGTCGTCCTGAGGCGAGTTCCCGTTG
EST: gi|15286162|gb|BI470053.1|BI470053
EST:     TTGGACGGCTGGGATCTTGGAATGTGATCATGTTTCTAACCTTAGAACAG                         ACTAAAAAGTTCGTCAAAAGTTTAGAGTCGTCCTGAGGCGAGTTCCCGTTG
genomic: TTGGACGGCTGGGATCTTGGAATGTGATCATGTTTCTAACCTTAGAACAGgtatattttg ... tttttgacagACTAAAAAGTTCGTCAAAAGTTTAGAGTCGTCCTGAGGCGAGTTCCCGTTG
EST: gi|213607924|gb|DB983879.1|DB983879
EST:     TTGGACGGCTGGGATCTTGGAATGTGATCATGTTTCTAACCTTAGAACAG                         ACTAAAAAGTTCGTCAAAAGTTTAGAGTCGTCCTGAGGCGAGTTCCCGTTG
genomic: TTGGACGGCTGGGATCTTGGAATGTGATCATGTTTCTAACCTTAGAACAGgtatattttg ... tttttgacagACTAAAAAGTTCGTCAAAAGTTTAGAGTCGTCCTGAGGCGAGTTCCCGTTG