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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAACAAGATTTGTCTTTGGAACAAGGGTGTCGATTCTGAAAGTTTCCATCCACGATTCAAGTCCCATGAAATGCGATTAAGGCTGAGgtgcagaccatttgccattttcatgtgcccaaggtttgatatttaatggggtttcaatttattcttaatcttgtgtcatacag

Basic information

species Glycine max
transcript GLYMA03G14200.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G14200.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os03g15840.1 (Oryza sativa), 5'ss of exon 8
CGAACAAGATTTGTCTTTGGAACAAGGGTGTCGATTCTGAAAGTTTCCATCCACGATTCAAGTCCCATGAAATGCGATTAAGGCTGAGgtgcagaccatttgccattttcatgtgcccaaggtttgatatttaatggggttt---caatttattcttaatcttgtgtcatacag-
| || |   || | ||||||||||| ||||| ||||||||||||||||||||   |||   |   |||||||||||  | |   ||||||     | ||||      |         ||   | ||| |   ||| | |  |    || ||||| |   | || | || |     
CAAATAGAGTTCGGCTTTGGAACAAAGGTGTTGATTCTGAAAGTTTCCATCCTAAATTTCGGAAGCATGAAATGCGCATTAAATTGAGgtttgacctatttctttaatattcaatagcagtatgtgaaaaaaaattgtgcatagctaacttattttcctttttctctcttgttag

upper sequence: GLYMA03G14200.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os07g01030.1 (Oryza sativa), 5'ss of exon 7
CGAACAAGATTTGTCTTTGGAACAAGGGTGTCGATTCTGAAAGTTTCCATCCACGATTCAAGTCCCATGAAATGCGATTAAGGCTGAGgtgcagaccatttgccattttcatgtgccca---aggtttgatatttaatggggtttcaatttattcttaatcttgtgtcatacag-------------------------------------------------------------------------------
| || |||||  | ||||||||||||||||| ||||| ||||| |||||||| || |||       | ||||||||   |||||| | ||    |   |   |  |  |||  ||||         |  | ||  ||||| | |  ||||  | ||   | |||  |||| ||                                                                                
CCAATAAGATACGCCTTTGGAACAAGGGTGTTGATTCAGAAAGCTTCCATCCCCGTTTCCGTAATGACGAAATGCGTGCAAGGCTAACgtatgtaatctcctctgtgctcagttgcctttttgcagtacagatgcaatggtgcta-aattgctactggttgttgcctcattcattatgtagagaatattttgaaatgagcaattatattccctgtctaacagcatgcttatactttcccttttcctctatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6455475|gb|AW186158.1|AW186158
EST:     GAAAGTTTCCATCCACGATTCAAGTCCCATGAAATGCGATTAAGGCTGAG                         CAATGGTGAACCTGAGAAGCCCTTGATAGTTCATTGT-GGACGGCTTGGAG
genomic: GAAAGTTTCCATCCACGATTCAAGTCCCATGAAATGCGATTAAGGCTGAGgtgcagacca ... tgtcatacagCAATGGTGAACCTGAGAAGCCCTTGATAGTTCAT-GTTGGACGGCTTGGAG