1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GAGTTGCAGCCCACCAAAACAATAGATGATCCCGAAATCAAGGCGTGGCTAGCATTGGGCACAAAGACAAAGAAGAAAGGCGGTGGAAAGAAGAAGAAAGgtagtctggaatcatgaatatattgcatgtgttatatcatatattgcatcatttacatgttaaccttggttatgtggaactgcatgtcaaatggggggcctcaagaaatgcttttggttgtttgcag
species | Glycine max |
transcript | GLYMA03G07420.3 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AAAGAAGAAGAAAG GTAAGAAGGGGGCAGAAGCTGAACCAATGGATGCAACAAATGATGCTACACEST: gi|31471537|gb|CD413565.1|CD413565
genomic: AAAGAAGAAGAAAGgtagtctgga ... ttgtttgcagGTAAGAAGGGGGCAGAAGCTGAACCAATGGATGCAACAAATGATGCTACAC
EST: GGAAAGAAGAAGAAAG GTAAGAAGGGGGCAGAAGCTGAACCAATGGATGCAACAAATGATGCTACACEST: gi|208331945|gb|GE126054.1|GE126054
genomic: GGAAAGAAGAAGAAAGgtagtctgga ... ttgtttgcagGTAAGAAGGGGGCAGAAGCTGAACCAATGGATGCAACAAATGATGCTACAC
EST: AAGGCGGTGGAAAGAAGTTAAGTAAAG GTAAGAAGGGGGCAGAAGCTGAACCAATGGATGCAACAAATGATGCTACAEST: gi|193425640|gb|FK387351.1|FK387351
genomic: AAGGCGGTGGAAAGAAG--AAG-AAAGgtagtctgga ... ttgtttgcagGTAAGAAGGGGGCAGAAGCTGAACCAATGGATGCAACAAATGATGCTACA
EST: GCGGTGGAAAGAAGAAGAAAG GTAAGAAGGGGGCAGAAGCTGAACCAATGGATGCAACAAATGGTGCTACACEST: gi|193364714|gb|FK330129.1|FK330129
genomic: GCGGTGGAAAGAAGAAGAAAGgtagtctgga ... ttgtttgcagGTAAGAAGGGGGCAGAAGCTGAACCAATGGATGCAACAAATGATGCTACAC
EST: AGAAGAAGAAAG GTAAGTTAAGGGGGTCTAGAAGCTGAACCAATGGATGCAACAAATGATGCTEST: gi|207832932|gb|GD801312.1|GD801312
genomic: AGAAGAAGAAAGgtagtctgga ... ttgtttgcagGTAAG--AAGGGGG-C-AGAAGCTGAACCAATGGATGCAACAAATGATGCT
EST: AGAAGAAGAAAG GTAAGTTAAGGGGGTCTAGAAGCTGAACCAATGGATGCAACAAATGATGCT
genomic: AGAAGAAGAAAGgtagtctgga ... ttgtttgcagGTAAG--AAGGGGG-C-AGAAGCTGAACCAATGGATGCAACAAATGATGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGTTGCAGCCCACCAAAACAATAGATGATCCCGAAATCAAGGCGTGGCTAGCATTGGGCACAAAGACAAAGAAGAAAGGCGGTGGAAAGAAGAAGAAAGgtagtctggaatcatgaatatattgcatgtgttatatcatatattgcatcatttacatgttaaccttggttatgtggaactgcatgtcaaatggggggcctcaagaaatgcttttggttgtttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA