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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAAGATAAACTTGAAGACAAGCTTGTCACTGTTGAAGACATAGTTCGTCAGCATTGGGCTACTTATGGGCGCCATTATTATAATCAATATGACTATGAAgtatgatacaatcacattttcctcctactttgttataatctgttttgagaatcagttaatcacctcaattttttttccttaaag

Basic information

species Glycine max
transcript GLYMA03G05150.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G05150.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os03g50480.1 (Oryza sativa), 5'ss of exon 14
TAAAGATAAACTTGAAG---ACAAGCTTGTCACTGTTGAAGACATAGTTCGTCAGCATTGGGCTACTTATGGGCGCCATTATTATAATCAATATGACTATGAAgtatgatacaatcacattttcctcctactttgttata---atctgt-tttgagaatcagttaatcacctcaattttttttccttaaag
    || || |||| ||   | |||||||| ||||||||||| || ||||| ||||| |||| ||||||||| |||||||||||||  | |||||||||||| |||   ||||   | |||        | ||   | ||   || |   ||||  ||   | ||| ||   || |||||| | | | |||
---GGACAACCTTGGAGGCGATAAGCTTGTTACTGTTGAAGATATTGTTCGCCAGCACTGGGGTACTTATGGTCGCCATTATTATACACGATATGACTATGAGgtactttacacaaatattcaatgtacatttatgtgtatgtatatacatttggcaacatgctaaccatgccatttttttcttcctgaag

upper sequence: GLYMA03G05150.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G023289_T03 (Zea mays), 5'ss of exon 14
TAAAGATAAACTTGAAG---ACAAGCTTGTCACTGTTGAAGACATAGTTCGTCAGCATTGGGCTACTTATGGGCGCCATTATTATAATCAATATGACTATGAAgtatg---atacaatcacattttcctcctactttgttataatctgttttgagaatcagttaatc--acctcaattttttttccttaaag
    || || |||| ||   | |||||||||||||||||||| || || |||||||||||||| || ||||| ||||||||||| |  |  ||||||||||| |||      |    |||||| | |||   |  |   ||  |  |||||     ||   | | ||  |   || |  ||| |   | |||
---GGACAACCTTGGAGGAGATAAGCTTGTCACTGTTGAAGATATTGTCCGTCAGCATTGGGCCACATATGGTCGCCATTATTACACACGCTATGACTATGAGgtacttcctttttttcacatgtgccttgcatatatgtaccacatgtttcagatatatatcattctaaatacattagtttgtttgtgaag

upper sequence: GLYMA03G05150.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G109383_T02 (Zea mays), 5'ss of exon 14
TAAAGATAAACTTGAAG---ACAAGCTTGTCACTGTTGAAGACATAGTTCGTCAGCATTGGGCTACTTATGGGCGCCATTATTATAATCAATATGACTATGAAgtatga----tacaatcacattttcctcctactttgttataatctgttttgagaatcagt-taatcacctcaattttttttcct-taaag
    || || |||| ||   | |||||||||||||||||||| || || |||||||| ||||| || ||||| |||||||| || |  |  ||||||||||| |||       |    | ||||   |||   |  |   ||  | ||||||     |||| | |||   |   | ||||||||  | | |||
---GGACAACCTTGGAGGAGATAAGCTTGTCACTGTTGAAGATATTGTCCGTCAGCACTGGGCCACATATGGTCGCCATTACTACACACGCTATGACTATGAGgtacttccttttttttgacatgccccttgcatatatgtaccacctgtttaagatatcattctaaatgcacaagtttttttttttgtgaag

upper sequence: GLYMA03G05150.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv01s0011g05370.t01 (Vitis vinifera), 5'ss of exon 15
TAAAGATAAACTTGAAGACAAGCTTGTCACTGTTGAAGACATAGTTCGTCAGCATTGGGCTACTTATGGGCGCCATTATTATAATCAATATGACTATGAAgtatgatacaatcacattttcctcctactttgttataatctgttttgagaatcagttaatcacctcaattttttttccttaaag
  || |      || ||  |||||||| ||||||||||| ||||||||  | ||||||||||| ||||| ||||| ||||||| || |||||||||||| |||||||| | | || |  |  |      | |  | ||     || ||| |||  ||||     |||| || ||   ||| |||
GGAAAACCTTGGTGGAGCAAAGCTTGTTACTGTTGAAGAAATAGTTCGCAATCATTGGGCTACCTATGGCCGCCACTATTATACTCGATATGACTATGAGgtatgatatact-acctaattttttgttctagcaaaaagaatcttggagtatcttttaactggttcaaattatt---cttgaag