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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAACCAGAGCTGTTTCCAGGACTAATCTACCGTATGAAGCAACCAAAAATAGTCTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAGgtaaaaattttgcttatatttccccttgtaatttccctccatttttttggttcactgaatttatctgttttcaattccattttcag

Basic information

species Glycine max
transcript GLYMA03G04500.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G04500.1 (Glycine max), 5'ss of exon 8
lower sequence: AT1G55520.1 (Arabidopsis thaliana), 5'ss of exon 8
TGAACCAGAGCTGTTTCCAGGACTAATCTACCGTATGAAGCAACCAAAAATAGTCTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAGgtaaaaattttgcttatatttccccttgtaatttccctccatttttttggttcactgaatttatctgttttcaattccattttcag
 || || ||||| ||||||||| | || ||  | ||||| |  ||||| || ||  ||||||| ||||| || ||||| |||||| |||| ||||||||||||| ||||   ||| | |       |  || ||   |||||     || |||  | |  ||||    |  | | ||         
CGAGCCTGAGCTATTTCCAGGATTGATATATAGGATGAAACTTCCAAAGATTGTACTGCTTATTTTTGTGTCAGGAAAGATTGTTATAACTGGAGCCAAGgtaataattgaacttctctcaaatgattaaaattgtttccatgaaaatgcttctgtcatcttatgaaatcccgaatcag-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31461676|gb|CD403704.1|CD403704
EST:     TAGTCTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAG                         GTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCTGTGCTTACG
genomic: TAGTCTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAGgtaaaaattt ... ccattttcagGTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCTGTGCTTACG
EST: gi|27445915|gb|CA953038.1|CA953038
EST:     TAGTCTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAG                         GTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCTGTGCTTACG
genomic: TAGTCTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAGgtaaaaattt ... ccattttcagGTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCTGTGCTTACG
EST: gi|254322493|gb|GR837907.1|GR837907
EST:     TAGTCTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAG                         GTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCTGTGCTTACG
genomic: TAGTCTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAGgtaaaaattt ... ccattttcagGTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCTGTGCTTACG
EST: gi|193372010|gb|FK334625.1|FK334625
EST:     TAGTCTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAG                         GTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCTGTGCTTACG
genomic: TAGTCTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAGgtaaaaattt ... ccattttcagGTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCTGTGCTTACG
EST: gi|193447546|gb|FK415071.1|FK415071
EST:     TAGTCTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAG                         GTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTT
genomic: TAGTCTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAGgtaaaaattt ... ccattttcagGTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCTGTGCTT
EST: gi|208110383|gb|GD911811.1|GD911811
EST:     TAGTCTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAG                         GTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCTGTGCTTACG
genomic: TAGTCTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAGgtaaaaattt ... ccattttcagGTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCTGTGCTTACG
EST: gi|193362081|gb|FK326487.1|FK326487
EST:     TATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAG                         GTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCTGTGCTTACG
genomic: TATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAGgtaaaaattt ... ccattttcagGTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCTGTGCTTACG
EST: gi|208049718|gb|GD847081.1|GD847081
EST:     TAGTCTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAG                         GTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCTGTGCTTACG
genomic: TAGTCTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAGgtaaaaattt ... ccattttcagGTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCTGTGCTTACG
EST: gi|31455890|gb|CD397918.1|CD397918
EST:     TAGTCTTGCTTATATTTGTCTCTGGATAAATTGTTCTAACAGGAGCCAAG                         GTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCTGTGCTTACG
genomic: TAGTCTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAGgtaaaaattt ... ccattttcagGTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCTGTGCTTACG
EST: gi|254316348|gb|GR827885.1|GR827885
EST:     CTGG-AAAATTGTTCTAACAGGAGCCAAG                         GTGAGAGATGAGACTTACCACTGCCTTTGAAAACATATATCCTGTGCTTAC
genomic: CTGGAAAAATTGTTCTAACAGGAGCCAAGgtaaaaattt ... ccattttcagGTGAGAGATGAGACTTA-CACTGCCTTTGAAAACATATATCCTGTGCTTAC
EST: gi|208120323|gb|GD915568.1|GD915568
EST:     TAGTTTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAG                         GTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCC
genomic: TAGTCTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAGgtaaaaattt ... ccattttcagGTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCC
EST: gi|208025200|gb|GD823864.1|GD823864
EST:     TAGTCTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAG                         GTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCTGTGCTTACG
genomic: TAGTCTTGCTTATATTTGTCTCTGGAAAAATTGTTCTAACAGGAGCCAAGgtaaaaattt ... ccattttcagGTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCTGTGCTTACG