Sequence
atgc intronic sequence ATGC exonic sequenceGATACTGTGAACTCAATTGTTACTGACATGCTCCAATGGCCTCATAGGATTGTGGTTCCACTTGGTGGCATTCCTGTTGATACCAGgtaaatattaaatattaatcttctggaagcttttgcttctttctgattgcagataaaaacatgactagatatgttgctatatccttttaacaaaatttta...
Basic information
species | Glycine max |
transcript | GLYMA03G02370.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G02370.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os07g22640.3 (Oryza sativa), 5'ss of exon 2
GATACTGTGAACTCAATTGTTACTGACATGCTCCAATGGCCTCATAGGATTGTGGTTCCACTTGGTGGCATTCCTGTTGATACCAGgtaaatattaaatattaatcttctggaagcttttgcttctttctgattgcagataaaaacatgactagatatg-ttgctatatccttttaacaaaatttta--
|| ||||| || ||||||||| ||||||||||| | ||||| || ||| |||| ||||||||||||| || | |||||||| |||| | | | | ||| || | || | | | ||| | | | || | | || | | | | | | | |||
GACACTGTCAATTCAATTGTTTCTGACATGCTCAAGTGGCCACACAGGCTTGTTGTTCCACTTGGTGTCAAT---GTTGATACAAGgtgacttct---cttgaatgttgtcaccagttataatcaatcctgctaactgttagctctccaatcatatgcaataaatgttgacaatgagctgcttttctgt
upper sequence: GLYMA03G02370.1 (Glycine max), 5'ss of exon 8
lower sequence: AT3G61050.1 (Arabidopsis thaliana), 5'ss of exon 9
GATACTGTGAACTCAATTGTTACTGACATGCTCCAATGGCCTCATAGGATTGTGGTTCCACTTGGTGGCATTCCTGTTGATACCAGgtaaatattaaatattaatcttctggaagcttttgcttcttt-ctgattgcagataaaaacatgacta--gatatgttgctatatc----cttttaacaaaatttta----------------------------------------------------------------------------------------------
|||||||| | | || || | |||||||| || ||||||||||| ||||| ||||| ||||||| |||||||||||| ||||| || | | | | | || | || || || | || | ||| || | ||| | || ||| | | | ||
GATACTGTTGATACTATCGTCAAAGACATGCTTCAGTGGCCTCATAGAATTGTTGTTCCCATTGGTGGTATTCCTGTTGATTTAAGgtactcat-gtgttctgcttgattttcattttgcgttttttcactcacaacatttttgcctgccactgccaatcttttgtcttttcttctcttctgttatagccataggatttacgtattgccaatcttggggaggtcatgatacgtattgagaaagcactagatagtttgacgattctctctatcttttctctttcccag
upper sequence: GLYMA03G02370.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv15s0048g01410.t01 (Vitis vinifera), 5'ss of exon 9
GATACTGTGAACTCAATTGTTACTGACATGCTCCAATGGCCTCATAGGATTGTGGTTCCACTTGGTGGCATTCCTGTTGATACCAGgtaaatattaaatattaatcttctggaagcttttgcttctttctgattgcagataaaaacatgactagata-tgttgctatatccttttaacaaaatttta--
||||||||||| | ||| | || || |||||||||||||| || |||||||| |||||| ||||||| || ||||| ||||| |||||| | || | || || | ||| | | | || || || || | | | || | || || || | | | | || | |
GATACTGTGAATACCATTATCACAGATATGCTCCAATGGCCCCACAGGATTGTTGTTCCAATTGGTGGTATGCCTGTGGATACAAGgtaagttagaattttttatttactgt---catatattttattagagttctagtttgtggtttcttcatttactttttctgcttcaatctcaaatcatgtgataMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|22523124|gb|BU081935.1|BU081935EST: TGGCCTCATAGGATTGTGGTTCCACTTGGTGGCATTCCTGTTGATACCAG TGAACTGGAGCTTAAACCCCAGGGAAAACTTGCACTGACTGTAGTGAAAGC
genomic: TGGCCTCATAGGATTGTGGTTCCACTTGGTGGCATTCCTGTTGATACCAGgtaaatatta ... tttcttgcagTGAACTGGAGCTTAAACCCCAGGGAAAACTTGCACTGACTGTTGTCAAAGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATACTGTGAACTCAATTGTTACTGACATGCTCCAATGGCCTCATAGGATTGTGGTTCCACTTGGTGGCATTCCTGTTGATACCAGgtaaatattaaatattaatcttctggaagcttttgcttctttctgattgcagataaaaacatgactagatatgttgctatatccttttaacaaaatttta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gataaaaa