Sequence
atgc intronic sequence ATGC exonic sequenceAGGACTTCGACAACCAAGGCTGGAAGGTGAAGAGTATCTATCAATTGTAGATGAATTTATGGAAGCTGTTCATGCTCGATGGCCCAAGGCTATTGTGCAGgtatgcttatttattttttctccttttcccattgatatgcattggtttgtatttattctagcacatattactgactcccaatgttctatttagattatatcaatttttgtaactagattgttgtgttaatgttatcag
Basic information
species | Glycine max |
transcript | GLYMA03G01680.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G01680.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os10g35960.2 (Oryza sativa), 5'ss of exon 7
AGGACTTCGACAACCAAGGCTGGAAGGTGAAGAGTATCTATCAATTGTAGATGAATTTATGGAAGCTGTTCATGCTCGATGGCCCAAGGCTATTGTGCAGgtatgcttatttattttttctccttt-tcccattgatatgcattggtttgtatttattctagcacatattactgactcccaatgttctatttagattatatcaatttttgtaactagattgttgtgttaatgttatcag
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AGGACTGAGGCAACCTAGGCTGGAAGGAGAAGAATACTTGTCTGTTGTAGATGAATTCATGGAAGCTGTTCATGCACGTTGGCCGAAAGCAGTTGTGCAGgttcgtgcactttctggtaatgttttgttacctaaccaagtgatgcaccattactgaagttgtaaa-gttacag-----------------------------------------------------------------
upper sequence: GLYMA03G01680.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv15s0046g03670.t01 (Vitis vinifera), 5'ss of exon 7
AGGACTTCGACAACCAAGGCTGGAAGGTGAAGAGTATCTATCAATTGTAGATGAATTTATGGAAGCTGTTCATGCTCGATGGCCCAAGGCTATTGTGCAGgtatgcttatttattttttctccttttcccattgatatgcattggtttgtatttattctagcacatattactgactcccaatgttctatttagattatatcaatttttgtaactagattgttgtgttaatgttatcag
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AGGACTTCGGCAACCTAGATTGGAAGGAGAAGAGTATCTATCAGTTGTTGATGAATTAATGGAAGCTATTTTCACTCGTTGGCCCAAGGCTATTGTACAGgttcatttctttaaatctacaactattgtcata-------------ttttatctaatgcatgtcatattgttaact--ggatgga-tgggaaaatcatatcag-----------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151395881|gb|EV265758.1|EV265758EST: ATGAATTTATGGAAGCTGTTCATGCTCGATGGCCCAAGGCTATTGTGCAG TTTGAGGATTTTCAAATGAAGTGGGCTTTTGAAACCCTGAAAAGATATCAG
genomic: ATGAATTTATGGAAGCTGTTCATGCTCGATGGCCCAAGGCTATTGTGCAGgtatgcttat ... atgttatcagTTTGAGGATTTTCAAATGAAGTGGGCTTTTGAAACCCTGAAAAGATATCAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGGACTTCGACAACCAAGGCTGGAAGGTGAAGAGTATCTATCAATTGTAGATGAATTTATGGAAGCTGTTCATGCTCGATGGCCCAAGGCTATTGTGCAGgtatgcttatttattttttctccttttcccattgatatgcattggtttgtatttattctagcacatattactgactcccaatgttctatttagattatatcaatttttgtaactagattgttgtgttaatgttatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT