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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATCTGACAGTTGCTGTTACTCCATTCTGCATAGTGTTTGCTGTGGTTTGGGCAGTTTATCGCCATGCATCGTTTGCTTGGATTGGTCAGGATATCCTTgtaagaatagtttttttacttttgattagaaaataaatctattaattttactatatcttctggttatctttttttcttcctttacattttctaatgttta...

Basic information

species Glycine max
transcript GLYMA03G01100.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G01100.2 (Glycine max), 5'ss of exon 8
lower sequence: Vv15s0046g02460.t01 (Vitis vinifera), 5'ss of exon 8
ATATCTGACAGTTGCTGTTACTCCATTCTGCATAGTGTTTGCTGTGGTTTGGGCAGTTTATCGCCATGCATCGTTTGCTTGGATTGGTCAGGATATCCTTgtaagaatagtttt-tttacttttgattagaaaataaatctattaattttactatatct-tctggtt-atctttttttcttcctttacattttctaatgttta
|||||||||  | |||||  |||||||||||||||  |||||||| ||||||||||||| |||||        |||||||||||||| || |||||||||||||| | |  | | |  |  |   |   | |   |  |||  |   ||  | ||  || | ||||  || |   |||     |||     | ||| |||   
ATATCTGACTTTGGCTGTGTCTCCATTCTGCATAGCATTTGCTGTTGTTTGGGCAGTTTTTCGCCGCATCAACTTTGCTTGGATTGGACAAGATATCCTTgtaagcacaaatatatccatatcctaaatgcatgaatttctgattgcttatccatgcctatttggtccatttaacttttggtttttgacagtgctagtgt---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151409520|gb|EV279328.1|EV279328
EST:     GGGCAGTTTATCGCCATGCATCGTTTGCTTGGATTGGTCAGGATATCCTT                         GGTATCACATTGATAATTACAGTTCTTCAGATTGTTCGCATACCAAATCTC
genomic: GGGCAGTTTATCGCCATGCATCGTTTGCTTGGATTGGTCAGGATATCCTTgtaagaatag ... tgtcattcagGGTATCACATTGATAATTACAGTTCTTCAGATTGTTCGCATACCAAATCTC
EST: gi|254319501|gb|GR829013.1|GR829013
EST:     GGGCAGTTTATCGCCATGCATCGTTTGCTTGGATTGGTCAGGATATCCTT                         GGTATCACATTGATAATTACAGTTCTTCAGATTGTTCGCATACCAAATCTC
genomic: GGGCAGTTTATCGCCATGCATCGTTTGCTTGGATTGGTCAGGATATCCTTgtaagaatag ... tgtcattcagGGTATCACATTGATAATTACAGTTCTTCAGATTGTTCGCATACCAAATCTC