1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CCTCCTGAGGTATGGGATGGTGGTGAAGGATTTGTGTCAAAGGAGATGATTCAAACCCATTGCCCTGCTCCAGCACAAGATATTAAGgtaattgtttcattatttaacccattactccaaaattatgatattttcttttgctaatcattgcataaaaggaagataaatgattagacgtgtttcttgcggattttcag
species | Glycine max |
transcript | GLYMA03G00920.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CAAAGGAGATGATTCAAACCCATTGCCCTGCTCCAGCACAAGATATTAAG ATATTGAGATGTGGCCCACCACCTATGAACAAGGCCATGGCTGCACACCTTEST: gi|58021619|gb|CX708360.1|CX708360
genomic: CAAAGGAGATGATTCAAACCCATTGCCCTGCTCCAGCACAAGATATTAAGgtaattgttt ... ggattttcagATATTGAGATGTGGCCCACCACCTATGAACAAGGCCATGGCTGCACACCTT
EST: CAAAGGAGATGATTCAAACCCATTGCCCTGCTCCAGCACAAGATATTAAG ATATTGAGATGTGGCCCACCACCTATGAACAAGGCCATGGCTGCACACCTTEST: gi|298184687|gb|HO029900.1|HO029900
genomic: CAAAGGAGATGATTCAAACCCATTGCCCTGCTCCAGCACAAGATATTAAGgtaattgttt ... ggattttcagATATTGAGATGTGGCCCACCACCTATGAACAAGGCCATGGCTGCACACCTT
EST: CAAAGGAGATGATTCAAACCCATTGCCCTGCTCCAGCACAAGATATTAAG ATATTGAGATGTGGCCCACCACCTATGAACAAGGCCATGGCTGCACACCTTEST: gi|193684767|gb|FK622291.1|FK622291
genomic: CAAAGGAGATGATTCAAACCCATTGCCCTGCTCCAGCACAAGATATTAAGgtaattgttt ... ggattttcagATATTGAGATGTGGCCCACCACCTATGAACAAGGCCATGGCTGCACACCTT
EST: CAAAGGAGATGATTCAAACCCATTGCCCTGCTCCAGCACAAGATATTAAG ATATTGAGATGTGGCCCACCACCTATGAACAAGGCCATGGCTGCACACCTTEST: gi|151403993|gb|EV273803.1|EV273803
genomic: CAAAGGAGATGATTCAAACCCATTGCCCTGCTCCAGCACAAGATATTAAGgtaattgttt ... ggattttcagATATTGAGATGTGGCCCACCACCTATGAACAAGGCCATGGCTGCACACCTT
EST: CAAAGGAGATGATTCAAACCCATTGCCCTGCTCCAGCACA-GATATTA-G ATATTGAGATGTGGCCCACCACCTATGAACAAG-C-ATGGCTGCACACCTTEST: gi|56173100|gb|CV997226.1|CV997226
genomic: CAAAGGAGATGATTCAAACCCATTGCCCTGCTCCAGCACAAGATATTAAGgtaattgttt ... ggattttcagATATTGAGATGTGGCCCACCACCTATGAACAAGGCCATGGCTGCACACCTT
EST: CAAAGGAGATGATTCAAACCCATTGCCCTGCTCCAGCACATGATATTAAG ATATTGAGATGTGGCCCACCACCTATGAACAAGGCCATGGCTGCACACCTTEST: gi|151399348|gb|EV269219.1|EV269219
genomic: CAAAGGAGATGATTCAAACCCATTGCCCTGCTCCAGCACAAGATATTAAGgtaattgttt ... ggattttcagATATTGAGATGTGGCCCACCACCTATGAACAAGGCCATGGCTGCACACCTT
EST: CAAAGGAGATGATTCAAACCCATTGCCCTGCTCCAGCACAAGATATTAAG ATATTGAGATGTGGCCCACCACCTATGAACAAG-CCATGGCTGCACACCTTEST: gi|193576645|gb|FK533728.1|FK533728
genomic: CAAAGGAGATGATTCAAACCCATTGCCCTGCTCCAGCACAAGATATTAAGgtaattgttt ... ggattttcagATATTGAGATGTGGCCCACCACCTATGAACAAGGCCATGGCTGCACACCTT
EST: CAAAGGAGATGATTCAAACCCATTGCCCTGCTCCAGCACAAGATATTAAG ATATTGAGATGTGGCCCACCACCTATGAACAAGGCCATGGCTGCACACCTT
genomic: CAAAGGAGATGATTCAAACCCATTGCCCTGCTCCAGCACAAGATATTAAGgtaattgttt ... ggattttcagATATTGAGATGTGGCCCACCACCTATGAACAAGGCCATGGCTGCACACCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTCCTGAGGTATGGGATGGTGGTGAAGGATTTGTGTCAAAGGAGATGATTCAAACCCATTGCCCTGCTCCAGCACAAGATATTAAGgtaattgtttcattatttaacccattactccaaaattatgatattttcttttgctaatcattgcataaaaggaagataaatgattagacgtgtttcttgcggattttcag
- - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - GAGATG