1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TTTGAAGGTTGAAAATATAATGGATTTCTGCTGGTCTCCAACTGATCCAATTATTGCTCTTTTTGTTCCTGAGATGGGAGGTGGTAACCAGCCTGCCAGGgtaagtgtgtttttttctttcatgtatgtggtttaaagttttgttttacttgggtatcataatgaatggtcttatattatttatcaattattatatatatgttctttgacatatttatag
species | Glycine max |
transcript | GLYMA03G00470.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TTATTGCTCTTTTTGTTCCTGAGATGGGAGGTGGTAACCAGCCTGCCAGG GTTAGTCTGATTCAAATCCCCAGCAAAGAGGAACTCAGGCAGAAAAACCTTEST: gi|254329399|gb|GR838952.1|GR838952
genomic: TTATTGCTCTTTTTGTTCCTGAGATGGGAGGTGGTAACCAGCCTGCCAGGgtaagtgtgt ... atatttatagGTTAGTCTGATTCAAATCCCCAGCAAAGTGGAACTCAGGCAGAAAAACCTT
EST: TTATTGCTCTTTTTGTTCCTGAGATGGGAGGTGGTAACCAGCCTGCCAGG GTTAGTCTGATTCAAATCCCCAGCAAAGTGGAACTCAGGCAGAAAAACCTT
genomic: TTATTGCTCTTTTTGTTCCTGAGATGGGAGGTGGTAACCAGCCTGCCAGGgtaagtgtgt ... atatttatagGTTAGTCTGATTCAAATCCCCAGCAAAGTGGAACTCAGGCAGAAAAACCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTGAAGGTTGAAAATATAATGGATTTCTGCTGGTCTCCAACTGATCCAATTATTGCTCTTTTTGTTCCTGAGATGGGAGGTGGTAACCAGCCTGCCAGGgtaagtgtgtttttttctttcatgtatgtggtttaaagttttgttttacttgggtatcataatgaatggtcttatattatttatcaattattatatatatgttctttgacatatttatag
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