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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTATTGATTTGATTGTACAACATATTCGCACGAAGCTTGGTCAGCATGACATGTGTAAAATATATCGTAACTTATATGTCATTCAGTCTACTTTTCAGgtacccctttcttgttatttattgactttatcaatgatcccatcttcccccgttcagctggaacttccaaattcaattttttttatttattaaaagttgaatcatcacgataattgcttcgatgtag

Basic information

species Glycine max
transcript GLYMA02G47270.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G47270.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os11g16370.1 (Oryza sativa), 5'ss of exon 8
GGCTATTGATTTGATTGTACAACATATTCGCACGAAGCTTGGTCAGCATGACATGTGTAAAATATATCGTAACTTATATGTCATTCAGTCTACTTTTCAGgtacc--------cctttcttgttatttattgactttatcaatgatcccatcttcccccgttcagctggaacttccaaattcaattt--tttttatttattaaaagttgaatcatcacg-ataattgctt-cgatgtag----------------
 || ||||| || || || || ||||||||||| ||||||||||| |||||  | |||||| || | |  || || |||||||||||| |||||| |||||||||        || |   |||| |  | |   ||  |  || |   ||  |  |    ||  | | |       | ||| ||| |  | |  | || || |   ||     | ||   |||| |  |  |  || |                 
TGCGATTGACTTAATCGTTCAGCATATTCGCACTAAGCTTGGTCAACATGATCTCTGTAAAGTACACCCCAATTTGTATGTCATTCAGACTACTTATCAGgtacctgatgtaaccataaatgttctgcagtcttttcttatataagaacaattgtctgtcttttgatagtctcataatattgaatgtaatatgcactttttcaggatttttgtaacatatataaatattgacattgcaatgctgctttctttcag

upper sequence: GLYMA02G47270.1 (Glycine max), 5'ss of exon 8
lower sequence: AT1G55810.1 (Arabidopsis thaliana), 5'ss of exon 8
GGCTATTGATTTGATTGTACAACATATTCGCACGAAGCTTGGTCAGCATGACATGTGTAAAATATATCGTAACTTATATGTCATTCAGTCTACTTTTCAGgtacccctttcttgttatttattgactttatcaatgatcccatc-ttcccccgttcagctggaacttccaaattcaattttttttatttattaaaagttgaatcatcacgataattgcttcgatgtag
 ||||||||||||||||| ||||| || |  |||||||| ||||| |||||  | |||||||| ||||  ||  | ||||| ||||| || |||||||||||    |||  |     ||| | | ||   ||||  |  | ||| ||  |  ||| ||    | |    | | | |   |||      |  |   ||                               
TGCTATTGATTTGATTGTGCAACACATCCATACGAAGCTCGGTCAACATGATCTCTGTAAAATTTATCCAAATCTTTATGTTATTCAATCAACTTTTCAGgttttacttattccccttttctcgtctac-tcaacaa--caatcattttcttgtttagtc--acccaaaagactgatcctttggccgctgcttgcag-------------------------------

upper sequence: GLYMA02G47270.1 (Glycine max), 5'ss of exon 8
lower sequence: AT4G26510.2 (Arabidopsis thaliana), 5'ss of exon 8
GGCTATTGATTTGATTGTACAACATATTCGCACGAAGCTTGGTCAGCATGACATGTGTAAAATATATCGTAACTTATATGTCATTCAGTCTACTTTTCAGgtacccctttcttgttatttattgactttatcaatgatcccatcttcccccgttcagctggaacttccaaattcaattttttttatttattaaaagttgaatcatcacgataattgcttcgatgtag
 |||||||| || ||||| ||||||||| |||| ||||| ||||| |||||  | ||||||||||||| |||  | || || || || || || |||||||||     |   |     | ||  || | |  | | |     ||||  |     ||      |     ||| |  |||| | ||                                           
AGCTATTGACTTAATTGTGCAACATATTTGCACCAAGCTGGGTCAACATGATCTCTGTAAAATATATCCTAATCTCTACGTTATACACTCGACATTTCAGgtaattgatatatcaatctcatctacat-acgagtaacattctcttaacta--ccaaacaagatccagaaaattgatttctcttgcag---------------------------------------

upper sequence: GLYMA02G47270.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv19s0015g01730.t01 (Vitis vinifera), 5'ss of exon 8
GGCTATTGATTTGATTGTACAACATATTCGCACGAAGCTTGGTCAGCATGACATGTGTAAAATATATCGTAACTTATATGTCATTCAGTCTACTTTTCAGgtacccct-ttcttgttatttattgactttatcaa---tgatcccatcttcccccgttca-gctggaacttccaaattcaattttttttatttat-taaaagttgaatcatcacgata--attgcttcgatgtag----------------------------------------------------------------
 || |||||||||||||| ||||||||||| || || ||||| || |||||  | ||||||||||||| |||  | ||||||||||| || ||||||||||||   |   ||||  |||||  |    ||||  |   ||      | | ||   ||    ||  |   ||  |||||| |  |||  | |   | |||| ||    ||| || |||    | | |||||| |                                                                  
AGCCATTGATTTGATTGTGCAACATATTCGTACAAAACTTGGACAACATGATCTTTGTAAAATATATCCTAATCTTTATGTCATTCAATCAACTTTTCAGgtatatcagctcttcctatttgctattattatttactgtgggtgtgtgtgcctgtgtgtgtgcgtgtgtttttaaattccaaatttcatgtcattgtaaatgtaaggtca-catgatcttgtggattcgatattcagttttatttgcctattgaagttccaaatttcatatgattgaagctttatttgatttgatccag