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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGATAACAGGTATAATGCAAGCAGAGGTGCACACTTAAACCTCAAACGTGCAGAGAAAGCTCGGATATTGGTCAACAAAATTCCAGgtatttgttaaatgagattataatcaccatcagatactgttcttattaatttaatctgctgtcgttgtaagcaaaacaaaatgatgccacattattggaataattttgtttctgttggtgaaaatgcag

Basic information

species Glycine max
transcript GLYMA02G46450.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G46450.3 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os06g20370.1 (Oryza sativa), 5'ss of exon 8
GATGATAACAGGTATAATGCAAGCAGAGGTGCACACTTAAACCTCAAACGTGCAGAGAAAGCTCGGATATTGGTCAACAAAATTCCAGgtatttgttaaatga----gattataatcaccatcagatactgttcttattaatttaat--ctgctgtcgttgtaagcaaaacaaaatgatgccacattattggaataattttgtttctgttg-gtgaaaatgcag------------------------------------------------------------
||||| ||||| |||||  ||||| ||||||| ||| | || ||||||||||| || || ||||||||  | |||||||| ||||||||||| | ||  ||||     ||   || | |   |  |  | |||   | |  ||| ||  ||     |  | ||               |   |  ||| || |    |  | ||| | ||| || ||  |                                                                
GATGACAACAGATATAACTCAAGCCGAGGTGCCCACCTGAATCTCAAACGTGCTGAAAAGGCTCGGATTCTTGTCAACAAGATTCCAGgtatgt-ttggatgacagcaatggaaacctctcacttagtcagttgcaaattttttcatacctaggaacactatatatgtccatggggcttattattttactgtaccgttcatttttgttttgagtaaatttatgaattctgctaatcatatgctttgttagtgtttggctaatgtaatgaatggttttattctag

upper sequence: GLYMA02G46450.3 (Glycine max), 5'ss of exon 8
lower sequence: AT5G55230.1 (Arabidopsis thaliana), 5'ss of exon 8
GATGATAACAGGTATAATGCAAGCAGAGGTGCACACTTAAACCTCAAACGTGCAGAGAAAGCTCGGATATTGGTCAACAAAATTCCAGgtatttgttaaatgagattataatcaccatcagatactgttcttattaatttaatctgctgtcgttgtaagcaaaacaaaatgatgccacattattggaataattttgtttctgttggtgaaaatgcag
||| | |||||||| |  |||||||||||||||||||| || |||||  | || ||||||||||||||  |||| | ||| ||||| ||||| |||  |||   | ||  ||    |||| ||||| | |  | |  | | || |  |  | |  ||   || |    ||  |     ||   |  |                              
GATCAGAACAGGTACAGCGCAAGCAGAGGTGCACACTTGAATCTCAAGAGAGCTGAGAAAGCTCGGATTCTGGTTAGCAAGATTCCTGgtatgtgtagaata--actaagat--atatcatatact-tgcaaacttctctcatgtattcacatcttata-aagattggatcttttgttatgtataaag-----------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208259220|gb|GE055470.1|GE055470
EST:     AAACCTCAAACGTGCAGAGAAAGCTCGGATATTGGTCAACAAAATTCCAG                         CTTTGGTCGATACATTGGTTGCTAAAACTCGTGCATGGGAAG
genomic: AAACCTCAAACGTGCAGAGAAAGCTCGGATATTGGTCAACAAAATTCCAGgtatttgtta ... gaaaatgcagCTTTGGTCGATACATTGGTTGCTAAAACTCGTGCATGGGAAG
EST: gi|15813527|gb|BI785802.1|BI785802
EST:     CTCGGATATTGGTCAACAAAATTCCAG                         CTTTGGTCGATACATTGGTTGCTAAAACTCGTGCATGGGAAGAAGATCATG
genomic: CTCGGATATTGGTCAACAAAATTCCAGgtatttgtta ... gaaaatgcagCTTTGGTCGATACATTGGTTGCTAAAACTCGTGCATGGGAAGAAGATCATG
EST: gi|207735001|gb|GD712532.1|GD712532
EST:     AAACCTCAAACGTGCAGAGAAAGCTCGGATATTGGTCAACAAAATTCCAG                         CTTTGGTCGATACATTGGTTGCTAAAACTCGTGCATGGGAAGAAGATCATG
genomic: AAACCTCAAACGTGCAGAGAAAGCTCGGATATTGGTCAACAAAATTCCAGgtatttgtta ... gaaaatgcagCTTTGGTCGATACATTGGTTGCTAAAACTCGTGCATGGGAAGAAGATCATG
EST: gi|51334691|gb|CO978557.1|CO978557
EST:     AAACCTCAAACGTGCAGAGAAAGCTCGGATATTGGTCAACAAAATTCCAG                         CTTTGGTCGATACATTGGTTGCTAAAACTCGTGCATGGGAAGAAGATCATG
genomic: AAACCTCAAACGTGCAGAGAAAGCTCGGATATTGGTCAACAAAATTCCAGgtatttgtta ... gaaaatgcagCTTTGGTCGATACATTGGTTGCTAAAACTCGTGCATGGGAAGAAGATCATG
EST: gi|26048331|gb|CA784835.1|CA784835
EST:     AAACCTCAAACGTGCAGAGAAAGCTCGGATATTGGTCAACAAAATTCCAG                         CTTTGGTCGATACATTGGTTGCTAAAACTCGTGCATGGGAAGAAGATCATG
genomic: AAACCTCAAACGTGCAGAGAAAGCTCGGATATTGGTCAACAAAATTCCAGgtatttgtta ... gaaaatgcagCTTTGGTCGATACATTGGTTGCTAAAACTCGTGCATGGGAAGAAGATCATG
EST: gi|193511966|gb|FK471418.1|FK471418
EST:     AAACCTCAAACGTGCAGAGAAAGCTCGGATATTGGTCAACAAAATTCCAG                         CTTTGGTCGATACATTGGTTGCTAAAACTCGTGCATGGGAAGAAGATCATG
genomic: AAACCTCAAACGTGCAGAGAAAGCTCGGATATTGGTCAACAAAATTCCAGgtatttgtta ... gaaaatgcagCTTTGGTCGATACATTGGTTGCTAAAACTCGTGCATGGGAAGAAGATCATG
EST: gi|10843940|gb|BF067293.1|BF067293
EST:     AAACCTCAAACGTGCAGAGAAAGCTCGGATATTGGTCAACAAAATTCCAG                         CTTTGGTCGATACATTGGTTGCTAAAACTCGTGCATGGGAAGAAGATCATG
genomic: AAACCTCAAACGTGCAGAGAAAGCTCGGATATTGGTCAACAAAATTCCAGgtatttgtta ... gaaaatgcagCTTTGGTCGATACATTGGTTGCTAAAACTCGTGCATGGGAAGAAGATCATG