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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTTAGCAACTGGTTGGCTTCAGTGTGACCCTGACCCAATTTTTAAGCCAGATTATATTCCATTGCCAGGATTGATTTCTCATTGGgtaagtgccaaaaaaatatcctaataattacaaagagatagcagttttgccactaaacttaagaatttaagtctaagtttttcattttgcaacattttgtag

Basic information

species Glycine max
transcript GLYMA02G46440.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G46440.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv19s0090g01220.t01 (Vitis vinifera), 5'ss of exon 7
GATTTAGCAACTGGTTGGCTTCAGTGTGACCCTGACCCAATTTTTAAGCCAGATTATATTCCATTGCCAGGATTGATTTCTCATTGGgtaagt--gccaaaaaaatatcctaataattacaaagagatagcagttttgccactaaacttaagaatttaagtctaagtttttcattttgcaacattttgtag
|||||| |||||||||||||||  ||||| ||||||||| |||||||||||||  ||  ||| || | || || | || | || ||||| |||  |  |   | | ||  | | | | | |             | |   ||| || | |   |   | |   ||   |   |||||      | ||    
GATTTATCAACTGGTTGGCTTCGATGTGATCCTGACCCACTTTTTAAGCCAGAGCATTATCCTTTACTAGAATGGGTTCCACAATGGgtgagtcagttatctagagatttttaaactaaaatttttgcttatactctttaactgaaatgagtgagcaagggagaaaaata--attttaagctgtcttac--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19937460|gb|BQ081298.1|BQ081298
EST:     CAATTTTTAAGCCAGATTATATTCCATTGCCAGGATTGATTTCTCATTGG                         CTTCCTTGGAAAGAGATAGCAGTTTTGCCAGTACAGTGGGATGCCTTGTGG
genomic: CAATTTTTAAGCCAGATTATATTCCATTGCCAGGATTGATTTCTCATTGGgtaagtgcca ... cattttgtagCTTCCTTGGAAAGAGATAGCAGTTTTGCCAGTACAGTGGGATGCCTTGTGG