Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCAATGAAAACAGTCACAAGAAGGTTTCTTTGATGGGTGCTGCTCTTCATCCTTTCTTGGCgtaagtcttaatatgaatcattaactttctggaccagatctcgtatttcatatcctaaccaatattttatttttccag

Basic information

species Glycine max
transcript GLYMA02G45610.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192323691|gb|FK015997.1|FK015997
EST:     AGTCACAAGAAGGTTTCTTTGATGGGTGCTGCTCTTCATCCTTTCTTGGC                         GACGTCATACACTAATGTTCTCAAGAACTATTTTGAGAAAAATCTGCTTAC
genomic: AGTCACAAGAAGGTTTCTTTGATGGGTGCTGCTCTTCATCCTTTCTTGGCgtaagtctta ... atttttccagGACGTCATACACTAATGTTCTCAAGAACTATTTTGAGAAAAATCTGCTTAC
EST: gi|208041747|gb|GD843463.1|GD843463
EST:     AGTCACAAGAAGGTTTCTTTGATGGGTGCTGCTCTTCATCCTTTCTTGGC                         GACGTCATACACTAATGTTCTCAAGAACTATTTTGAGAAAAAT
genomic: AGTCACAAGAAGGTTTCTTTGATGGGTGCTGCTCTTCATCCTTTCTTGGCgtaagtctta ... atttttccagGACGTCATACACTAATGTTCTCAAGAACTATTTTGAGAAAAAT
EST: gi|208146996|gb|GD950613.1|GD950613
EST:     AGTCACAAGAAGGTTTCTTTGATGGGTGCTGCTCTTCATCCTTTCTTGGC                         GACGTCATACACTAATGTTCTCAAGAACTATTTTGAGAAAAA
genomic: AGTCACAAGAAGGTTTCTTTGATGGGTGCTGCTCTTCATCCTTTCTTGGCgtaagtctta ... atttttccagGACGTCATACACTAATGTTCTCAAGAACTATTTTGAGAAAAA
EST: gi|193370049|gb|FK336359.1|FK336359
EST:     AGTCACAAGAAGGTTTCTTTGATGGGTGCTGCTCTTCATCCTTTCTTGGC                         GACGTCATACACTAATGTTCTCAAGAACTATTTTGAGAAAAATCTGCTTAC
genomic: AGTCACAAGAAGGTTTCTTTGATGGGTGCTGCTCTTCATCCTTTCTTGGCgtaagtctta ... atttttccagGACGTCATACACTAATGTTCTCAAGAACTATTTTGAGAAAAATCTGCTTAC
EST: gi|193328139|gb|FK293376.1|FK293376
EST:     ATGGGTGCTGCTCTTCATCCTTTCTTGGC                         GACGTCATACACTAATGTTCTCAAGAACTATTTTGAGAAAAATCTGCTTAC
genomic: ATGGGTGCTGCTCTTCATCCTTTCTTGGCgtaagtctta ... atttttccagGACGTCATACACTAATGTTCTCAAGAACTATTTTGAGAAAAATCTGCTTAC
EST: gi|4282637|gb|AI440556.1|AI440556
EST:     AGTCACAAGAAGGTTTCTTTGATGGGTGCTGCTCTTCATCCTTTCTTGGC                         GACGTCATACACTAATGTTCTCAAGAACTATTTTGAGAAAAATCTGCTTAC
genomic: AGTCACAAGAAGGTTTCTTTGATGGGTGCTGCTCTTCATCCTTTCTTGGCgtaagtctta ... atttttccagGACGTCATACACTAATGTTCTCAAGAACTATTTTGAGAAAAATCTGCTTAC
EST: gi|208153997|gb|GD953958.1|GD953958
EST:     AGTCACAAGAAGGTTTCTTTGATGGGTGCTGCTCTTCATCCTTTCTTGGC                         GACGTCATACACTAATGTTCTCAAGAACTATTTTGAGAAAAATCTGCTTAC
genomic: AGTCACAAGAAGGTTTCTTTGATGGGTGCTGCTCTTCATCCTTTCTTGGCgtaagtctta ... atttttccagGACGTCATACACTAATGTTCTCAAGAACTATTTTGAGAAAAATCTGCTTAC
EST: gi|298181814|gb|HO025989.1|HO025989
EST:     AGTCACAAGAAGGTTTCTTTGATGGGTGCTGCTCTTCATCCTTTCTTGGC                         GACGTCATACACTAATGTTCTCAAGAACTATTTTGAGAAAAATCTGCTTAC
genomic: AGTCACAAGAAGGTTTCTTTGATGGGTGCTGCTCTTCATCCTTTCTTGGCgtaagtctta ... atttttccagGACGTCATACACTAATGTTCTCAAGAACTATTTTGAGAAAAATCTGCTTAC
EST: gi|193406246|gb|FK370585.1|FK370585
EST:     TCCTTTCTTGGC                         GACGTCATACACTAATGTTCTCAAGAACTATTTTGAGAAAAATCTGCTTTA
genomic: TCCTTTCTTGGCgtaagtctta ... atttttccagGACGTCATACACTAATGTTCTCAAGAACTATTTTGAGAAAAATCTGC-TTA
EST: gi|192323617|gb|FK017483.1|FK017483
EST:     AGTCACAAGAAAGTTTCTTTGATGGGTGCTGCTCTTCATCCTTTCTTGGC                         GACGTCATACACTAATGTTCTCAAGAACTATTT-GAGAAAA-TCTGCTTAC
genomic: AGTCACAAGAAGGTTTCTTTGATGGGTGCTGCTCTTCATCCTTTCTTGGCgtaagtctta ... atttttccagGACGTCATACACTAATGTTCTCAAGAACTATTTTGAGAAAAATCTGCTTAC
EST: gi|151404405|gb|EV274215.1|EV274215
EST:     AGTCACAAGAAGGTTTCTTTGATGGGTGCTGCTCTTCATCCTTTCTTGGC                         GACGTCATACACTAATGTTCTCAAGAACTATTTTGAGAAAAATCTGCTTAC
genomic: AGTCACAAGAAGGTTTCTTTGATGGGTGCTGCTCTTCATCCTTTCTTGGCgtaagtctta ... atttttccagGACGTCATACACTAATGTTCTCAAGAACTATTTTGAGAAAAATCTGCTTAC
EST: gi|208080975|gb|GD873831.1|GD873831
EST:     TCACAAGAAAGGTTTACTTTGATGGGTGCTGCTCTTCATCCTTTCTTGGC                         GACGTCATACACTAATGTTCTCAAGAACTATTTTGAGAAAAATCTGCTTAC
genomic: TCACAAG-AAGGTTT-CTTTGATGGGTGCTGCTCTTCATCCTTTCTTGGCgtaagtctta ... atttttccagGACGTCATACACTAATGTTCTCAAGAACTATTTTGAGAAAAATCTGCTTAC
EST: gi|19271087|gb|BM887343.1|BM887343
EST:     AGTCACAAGAAGGTTTCTTTGATGGGTGCTGCTCTTCATCCTTTCTTGGC                         GACGTCATACACTAATGTTCTCAAGAACTATTTTGAGAAAAATCTGCTTAC
genomic: AGTCACAAGAAGGTTTCTTTGATGGGTGCTGCTCTTCATCCTTTCTTGGCgtaagtctta ... atttttccagGACGTCATACACTAATGTTCTCAAGAACTATTTTGAGAAAAATCTGCTTAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGCAATGAAAACAGTCACAAGAAGGTTTCTTTGATGGGTGCTGCTCTTCATCCTTTCTTGGCgtaagtcttaatatgaatcattaactttctggaccagatctcgtatttcatatcctaaccaatattttatttttccag

- - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - -  GCTGCT