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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGCCAGAATACTTTTGTTCGTTTACATGTTTTACCATGTCTACCTGCACTTTGACCAGgtaatagctactgactgaatttaagaattgtctggtatgtggtgctttgctgcaagcagatcttaatattgaatttttggccttttaagatgtaataatg...

Basic information

species Glycine max
transcript GLYMA02G45240.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G45240.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv12s0028g01000.t01 (Vitis vinifera), 5'ss of exon 7
GTTGCCAGAATACTTTTGTTCGTTTACATGTTTTACCATGTCTACCTGCACTTTGACCAGgtaatagc---tactgactg-aatttaagaattgtctggtatgtggtgctttgctgcaa-gcagatcttaatattgaatttttggccttttaagatgtaataatg
||||||||||||||  | ||| | ||| ||||||||||| ||||| |||||| ||| ||||||||| |    |||  ||  ||    || |     ||     |||  |  |  | ||  ||| | |  ||  |      |     |  |  | | | |  |   
GTTGCCAGAATACTCCTTTTCATATACCTGTTTTACCATATCTACTTGCACTATGATCAGgtaataacactcactacctacaaacctaggaggaattgtcccatggaacccttgtacactgcatagcagaaagt---gcctgcatacaatagaaaagcagcac--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254325459|gb|GR838340.1|GR838340
EST:     TACTTTTGTTCGTTTACATGTTTTACCATGTCTACCTGCACTTTGACCAG                         ATTGAACAGATGCACGTGTTTGGACAAATGCTAGTCATTGTTGTGCCACTG
genomic: TACTTTTGTTCGTTTACATGTTTTACCATGTCTACCTGCACTTTGACCAGgtaatagcta ... tattcaacagATTGAACAGATGCACGTGTTTGGACAAATGCTAGTCATTGTTGTGCCACTG