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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCACCTTGGGACTTAAATGTTGAGAATAAGTTTATCATCCACTATACATATGGATGTGACTATAATATGAAGgtgagttcattctccttaatgcaactatgatgtgaaagtaaggtagagaaactatgtttctgtggtcagtattacttttgcagttttgcttatgtctgtccatgtataaaatgtgagtcttgcatgcttagttgttttatgtgtaaggtatttactccttattacttcatccag

Basic information

species Glycine max
transcript GLYMA02G44810.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G44810.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv06s0009g03360.t01 (Vitis vinifera), 5'ss of exon 6
CCACCTTGGGACTTAAATGTTGAGAATAAGTTTATCATCCACTATACATATGGATGTGACTATAATATGAAGgtgag---ttcattctccttaatgcaactatgatgtgaaagtaaggtagagaaactatgtttctgtggtcagtattacttttgcagttttgcttatgtctgtccatgtataaaatgtgagtcttgcatgcttagttgttttatgtgtaaggtatttactccttattacttcatccag
|| || ||||| ||  | |||| ||| |||||||| ||||| |||||||||||||||||||| ||| ||||||| |    |||  ||||  |    |||||    |      ||     |     | | | ||  ||   |  ||| | |  ||||   ||| || || | || |                                                                          
CCTCCATGGGATTTGGAAGTTGGGAAGAAGTTTATTATCCATTATACATATGGATGTGACTACAATTTGAAGgtaaaagattctctctctctctctcaactgctgttcactggttta-cattactattttattattgaaat-ggtagtgcacttgc---tttactgatttatgcctt------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209710619|gb|BW676545.1|BW676545
EST:     AGAATAAGTTTATCATCCACTATACATATGGATGTGACTATAATATGAAG                         GGGGAACTGACATATGGGAAGATTGGAGAATGGCGTTTTGACAAGAGGTCT
genomic: AGAATAAGTTTATCATCCACTATACATATGGATGTGACTATAATATGAAGgtgagttcat ... cttcatccagGGGGAACTGACATATGGGAAGATTGGAGAATGGCGTTTTGACAAGAGGTCT