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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGAAGGAAATCTTAAGCTTGCAGATTTTGGACTGGCACGATCATTTTCTAATGACCAAAATGCAAATCTTACAAATCGTGTCATTACGTTATGGTACAGgtaattggtgtcattttttatcatgatctatgagattggccaatgcatgtattgatttctttatatatatttag

Basic information

species Glycine max
transcript GLYMA02G44400.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G44400.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os05g32360.1 (Oryza sativa), 5'ss of exon 7
ATGAAGGAAATCTTAAGCTTGCAGATTTTGGACTGGCACGATCATTTTCTAATGACCAAAATGCAAATCTTACAAATCGTGTCATTACGTTATGGTACAGgtaat-tggtgtcattt-tttatcat--gatctatgagattg-gccaatgcatgtattgatttctttatatatatttag--------------------
||||||| ||  | ||||| || |||||||| || ||| |||||||||| ||||| || || | |||||| || |||||||| || || || ||||||||||| |   |  | ||    ||  |||   || |   | |||| |  |  | || || |  || |||     ||  | |                     
ATGAAGGTAACTTGAAGCTGGCTGATTTTGGCCTAGCAAGATCATTTTCAAATGATCATAACGGAAATCTCACTAATCGTGTGATCACTTTGTGGTACAGgtattgcagaattatgaacttgccattgaattttgcatattgtgttatggtatttagtttttgcttggatcatgctgaccatttgccaatgattttcag

upper sequence: GLYMA02G44400.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv06s0009g01800.t01 (Vitis vinifera), 5'ss of exon 8
ATGAAGGAAATCTTAAGCTTGCAGATTTTGGACTGGCACGATCATTTTCTAATGACCAAAATGCAAATCTTACAAATCGTGTCATTACGTTATGGTACAGgtaattggtgtcatttttt---atcatgatctatgagattggccaatgcatgtattgatttctttatatatatttag--------------------------
|||| |||||| | ||||||||||||||||| || || || |||||||| ||||| || ||||  ||||||||||||||||| ||||| |||||||||||||||   ||   | |        |   || ||  ||  |  |     || | | |  ||| ||| |     ||| |                           
ATGAGGGAAATTTGAAGCTTGCAGATTTTGGCCTTGCCCGGTCATTTTCAAATGATCACAATGGGAATCTTACAAATCGTGTTATTACCTTATGGTACAGgtaagcagttaaactcccatgggtagagaactcagatttcagtagcagcctctttctattccttaaggagcattaactgtttaaccaatcccaatttgaacag