Sequence
atgc intronic sequence ATGC exonic sequenceGTGGAAATAGATCTTCTGACTGGAGAAACCAGATGTTTGCAGACAGATATTATCTATGATTGTGGACAGAGTCTCAACCCAGCTGTGGATTTAGGACAGgtaagctaatatatatgtgggtgaaattataaatctgaaagactgaaactatttaactatacatgagatcaagaataaaagttaatagtacattactatt...
Basic information
species | Glycine max |
transcript | GLYMA02G44000.3 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G44000.3 (Glycine max), 5'ss of exon 8
lower sequence: AT3G43600.1 (Arabidopsis thaliana), 5'ss of exon 7
GTGGAAATAGATCTTCTGACTGGAGAAACCAGATGTTTGCAGACAGATATTATCTATGATTGTGGACAGAGTCTCAACCCAGCTGTGGATTTAGGACAGgtaagctaatatatatgtgggtgaaattataaatctgaaagactgaaactatttaactatacatgagatcaagaataaaagttaatagtacattactatt
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GTTGAAGTAGACCTTGTGACGGGACAAACCACAGTTCTACAGACAGATATCTTATATGACTGTGGAAAAAGTCTCAATCCCGCTGTCGATTTAGGACAGg-----taatatatatg-aagagagacctcaga---aagcaaatgaatcttttttgtaatgtgttttgt-gtgtttctgcttcag---------------
upper sequence: GLYMA02G44000.3 (Glycine max), 5'ss of exon 8
lower sequence: AT2G27150.2 (Arabidopsis thaliana), 5'ss of exon 8
GTGGAAATAGATCTTCTGACTGGAGAAACCAGATGTTTGCAGACAGATATTATCTATGATTGTGGACAGAGTCTCAACCCAGCTGTGGATTTAGGACAGgtaagctaatatatatgtgggtgaaattataaatctgaaagactgaaactatttaactatac-atgagatcaagaataaaagttaatagtacattactatt---
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GTGGAAGTGGACCTTGTGACAGGAAAAACCGAGATTTTAAGATCCGATATTATTTATGACTGTGGAAAGAGTCTTAATCCTGCAGTTGATTTAGGACAGgttagctagcattta----gttaactccacaagtttt---tcttgttttcttttagtcattttgttgagctaagcaaaaaaac--atggtttgtttttgaaaag
upper sequence: GLYMA02G44000.3 (Glycine max), 5'ss of exon 8
lower sequence: AT1G04580.1 (Arabidopsis thaliana), 5'ss of exon 8
GTGGAAATAGATCTTCTGACTGGAGAAACCAGATGTTTGCAGACAGATATTATCTATGATTGTGGACAGAGTCTCAACCCAGCTGTGGATTTAGGACAGgtaagctaatatatatgtgggtgaaattataaatctgaaagactgaaactatttaactatacatgagatcaagaataaaagttaatagtacattactatt
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GTGGAGGTTGACCTTGTGACAGGAAGAACAGAAATTATAAGATCAGATATTATCTATGACTGTGGAAAAAGCCTTAATCCTGCTGTTGATTTAGGACAGgtaattcgcttgat-tttggtccggattctggatgtgcac--ttgatgttctataac-aggttggttaattggcgtttatgtttgttttctttgagaag-
upper sequence: GLYMA02G44000.3 (Glycine max), 5'ss of exon 8
lower sequence: AT5G20960.2 (Arabidopsis thaliana), 5'ss of exon 8
GTGGAAATAGATCTTCTGACTGGAGAAACCAGATGTTTGCAGACAGATATTATCTATGATTGTGGACAGAGTCTCAACCCAGCTGTGGATTTAGGACAGgt--aagctaatatatatgtgggtgaaattataaatctgaaagactgaaactatttaactatacatgagatcaagaataaaa-gttaatagtacattactatt
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GTTGAAGTAAACGTTTTGACGGGAGAAACAACGATCCTGCGTACAGATATTATCTATGATTGTGGGAAGAGTCTCAATCCCGCTGTTGATTTAGGACAGgttagagccaggaaaccactctatgtgccgttttatgttata---ttgttctgtttcatgattctcttattttattttgttttgtttacag------------
upper sequence: GLYMA02G44000.3 (Glycine max), 5'ss of exon 8
lower sequence: Vv18s0041g02390.t01 (Vitis vinifera), 5'ss of exon 7
GTGGAAATAGATCTTCTGACTGGAGAAACCAGATGTTTGCAGACAGATATTATCTATGATTGTGGACAGAGTCTCAACCCAGCTGTGGATTTAGGACAGgtaagctaatatatatgtgggtgaaattataaatctgaaagactgaaactatt--taactatacatgagatcaagaataaaagttaatagtacattactatt
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GTGGAAGTAAATCTTCTCACTGGAGAAACCACAATTTTGCAATCTGATATTATATATGACTGTGGGCAAAGCCTCAACCCTGCTGTGGATTTAGGACAGgtcagcccaactacaatcttaaaatattctgtttccttctctgcttttctattcctaagctttgatta-atcacaacttgaattcaatt-tttacttccatt
upper sequence: GLYMA02G44000.3 (Glycine max), 5'ss of exon 8
lower sequence: Vv06s0009g00770.t01 (Vitis vinifera), 5'ss of exon 8
GTGGAAATAGATCTTCTGACTGGAGAAACCAGATGTTTGCAGACAGATATTATCTATGATTGTGGACAGAGTCTCAACCCAGCTGTGGATTTAGGACAGgtaagctaatatatatgtgggtgaaattataaatctgaaagactgaaactatttaactatacatgag---atcaagaataaaagttaatagtacattactatt
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GTGGAGGTAAATCTTCTCACTGGAGAAACCACCATTTTGCAATCTGATATTATATATGACTGTGGGCAGAGCCTCAACCCTGCTGTGGATTTAGGACAGgttagcc--caattacaatgttaaaatattatatttccttctctgcttttatattcctaagttttggttaattacaactcaaattcaatt-tttaatatttca
upper sequence: GLYMA02G44000.3 (Glycine max), 5'ss of exon 8
lower sequence: Vv18s0041g02430.t01 (Vitis vinifera), 5'ss of exon 8
GTGGAAATAGATCTTCTGACTGGAGAAACCAGATGTTTGCAGACAGATATTATCTATGATTGTGGACAGAGTCTCAACCCAGCTGTGGATTTAGGACAGgtaagctaatatatatgtgggtgaaattataaatctgaaagactgaaactatttaactatacatgagatcaagaataaaagttaatagtacattactatt---------
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GTGGAGGTAAATCTTCTCACTGGACAAACCACAATTTTGCAATCTGATATTATATATGACTGTGGTCAGAGTCTCAACCCTGCTGTGGATTTAGGACAGgttagcccaactaca---atattaaactat-----ttcatctccttctctgcttttctatccctaagctttggcattcaacctcttctctgatt-ttattctccacatc
upper sequence: GLYMA02G44000.3 (Glycine max), 5'ss of exon 8
lower sequence: Vv18s0041g02410.t01 (Vitis vinifera), 5'ss of exon 7
GTGGAAATAGATCTTCTGACTGGAGAAACCAGATGTTTGCAGACAGATATTATCTATGATTGTGGACAGAGTCTCAACCCAGCTGTGGATTTAGGACAGgtaagctaatatatatgtgggtgaaattataaatctgaaagactgaaactatttaactatacatgagatcaagaataaaagttaatagtacattactatt---------
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GTGGAGGTAAATCTTCTCACTGGACAAACCACAATTTTGCAATCTGATATTATATATGACTGTGGTCAGAGTCTCAACCCTGCTGTGGATTTAGGACAGgttagcccaactaca---atgttaaactat-----ttcatctccttctctacttttctatccctaagctttggcattcaacctcttccctgatt-ttattctccacatcMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|10232634|gb|BE801522.1|BE801522EST: TTATCTATGATTGTGGACAGAGTCTCAACCCAGCTGTGGATTTAGGACAG ATTGAAGGATCTTTTATCCAAGGGTT-GGGTTTTTTCATGCTTGAAGA
genomic: TTATCTATGATTGTGGACAGAGTCTCAACCCAGCTGTGGATTTAGGACAGgtaagctaat ... tatcctgcagATTGAAGGAGCTTTTGTCCAGGGGTTAGGGTTTTT-CATGCTTGAAGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGGAAATAGATCTTCTGACTGGAGAAACCAGATGTTTGCAGACAGATATTATCTATGATTGTGGACAGAGTCTCAACCCAGCTGTGGATTTAGGACAGgtaagctaatatatatgtgggtgaaattataaatctgaaagactgaaactatttaactatacatgagatcaagaataaaagttaatagtacattactatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG