Sequence
atgc intronic sequence ATGC exonic sequenceTGACATTCTTTTTCATGATTCCCATAGCATTCGTACAGTCACTGGCTAACATTGAAGGCATTGAAAAAGCAGCACCTTTCCTAAAATCTTTTATTGAAATgtaagtgttatttatttatttatttatttttcaatgtcatctttttcttttttgcattaatacatatttctgtccattggttgactttgtatataaaatt...
Basic information
species | Glycine max |
transcript | GLYMA02G43910.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G43910.2 (Glycine max), 5'ss of exon 8
lower sequence: AT4G15430.2 (Arabidopsis thaliana), 5'ss of exon 8
TGACATTCTTTTTCATGATTCCCATAGCATTCGTACAGTCACTGGCTAACATTGAAGGCATTGAAAAAGCAGCACCTTTCCTAAAATCTTTTATTGAAATgtaagtgttatttatttatttatttatttttcaatgtcatctttttcttttttgcattaatacatatttctgtccattggttgactttgtatataaaatt
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TCACCTTCTTCTTCATGATACCAATAGCATTTGTACAGTCACTCGCCAACATCGAAGGCATAGAGAAGGCTTTTCCTTTCTTGAAGCCCCTTATAGAAGTgta-------------tgtctctgtctatctcaacatgttctgtcccgctgcctagtagata-aagtctcttaccatttttggtctttgtgaacag----
upper sequence: GLYMA02G43910.2 (Glycine max), 5'ss of exon 8
lower sequence: Vv12s0059g01090.t01 (Vitis vinifera), 5'ss of exon 7
TGACATTCTTTTTCATGATTCCCATAGCATTCGTACAGTCACTGGCTAACATTGAAGGCATTGAAAAAGCAGCACCTTTCCTAAAATCTTTTATTGAAATgtaagtgttatttatttatttatttattttt-caatgtcatctttttcttttttgcattaatacatatttctgtccat-tggttgactttgtatataaaatt
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TTACCTTCTTTTTCATGATTCCCATTGCACTGGTACAGTCCCTTGCAAACATTGAGGGAATTGAGAAGGCAGTACCTTTTCTTAAGCCTTTAATTGAGACgtgagtttgctagtcttctttactacttgttgctatctcagaatatttattgtcatctgttctcaaatttttgatagtatctttttctttgtgtatatat--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151403177|gb|EV272987.1|EV272987EST: ATTGAAGGCATTGAAAAAGCAGCACCTTTCCTAAAATCTTTTATTGAAAT GCAATTCATAAAATCCTTTATACAAGGTTTCCTTCCTGGGATTGCTTTGAA
genomic: ATTGAAGGCATTGAAAAAGCAGCACCTTTCCTAAAATCTTTTATTGAAATgtaagtgtta ... tttattccagGCAATTCATAAAATCCTTTATACAAGGTTTCCTTCCTGGGATTGCTTTGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGACATTCTTTTTCATGATTCCCATAGCATTCGTACAGTCACTGGCTAACATTGAAGGCATTGAAAAAGCAGCACCTTTCCTAAAATCTTTTATTGAAATgtaagtgttatttatttatttatttatttttcaatgtcatctttttcttttttgcattaatacatatttctgtccattggttgactttgtatataaaatt
- - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG