1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GAATTGGGTACAAGTGGCTCCCTTGATGGACAGCAGAGATTGGTTGTAAAGGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGACGATATGTCAgtaagtatttgttttttatatttgataatctgttgtggtttcagaaataggttggaaagtatggaacagagtgagcctagcagacatgaacttcaaaaattctcccttggctattgcttttctgtctattttcgggccatcagttgaagttgatatacctctttgtttttttcag
species | Glycine max |
transcript | GLYMA02G40310.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGACGATATGTCA ATGAATACGTTATTTGCCTTGGGTGCAAGAGTCCGGATACTATACTTACAAEST: gi|12691100|gb|BG157436.1|BG157436
genomic: GGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGACGATATGTCAgtaagtattt ... tttttttcagATGAATACGTTATTTGCCTTGGGTGCAAGAGTCCGGATACTATACTTACAA
EST: GCGACGATATGTCA ATGAATACGTTATTTGCCTTGGGTGCAAGAGTCCGGATACTATACTTACAAEST: gi|207760750|gb|GD734073.1|GD734073
genomic: GCGACGATATGTCAgtaagtattt ... tttttttcagATGAATACGTTATTTGCCTTGGGTGCAAGAGTCCGGATACTATACTTACAA
EST: GGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGACGATATGTCA ATGAATACGTTATTTGCCTTGGGTGCAAGAGTCCGGATACTATACTTACAAEST: gi|192332834|gb|FK026835.1|FK026835
genomic: GGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGACGATATGTCAgtaagtattt ... tttttttcagATGAATACGTTATTTGCCTTGGGTGCAAGAGTCCGGATACTATACTTACAA
EST: GGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTTTGCGACGATATGTCA ATGAATACGTTATTTGCCTTGGGTGCAAGAGTCCGGATACTATACTTACAAEST: gi|21479883|gb|BQ576566.1|BQ576566
genomic: GGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGACGATATGTCAgtaagtattt ... tttttttcagATGAATACGTTATTTGCCTTGGGTGCAAGAGTCCGGATACTATACTTACAA
EST: GGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGACGATATGTCA ATGAATACGTTNATC-GTCTTGGGTGCAAGAGTCCGGATACTATACTTACAEST: gi|151412916|gb|EV282728.1|EV282728
genomic: GGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGACGATATGTCAgtaagtattt ... tttttttcagATGAATACGTT-ATTTGCCTTGGGTGCAAGAGTCCGGATACTATACTTACA
EST: GGAAAGTTTGCACCAAAGAACTTTGAAAGGA-TTCTGCGACGATATGTCA ATGAATACGTTATTTGCCTTGGGTGCAAGAGTCCCGGATACTATACTTACAEST: gi|209728549|gb|BW663549.1|BW663549
genomic: GGAAGGTTTGCACCAAAGAACTTTGAA-GGAATTCTGCGACGATATGTCAgtaagtattt ... tttttttcagATGAATACGTTATTTGCCTTGGGTGCAAGAGTCC-GGATACTATACTTACA
EST: GGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGACGATATGTCA ATGAATACGTTATTTGCCTTGGGTGCAAGAGTCCGGATACTATACTTACAAEST: gi|192323866|gb|FK018617.1|FK018617
genomic: GGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGACGATATGTCAgtaagtattt ... tttttttcagATGAATACGTTATTTGCCTTGGGTGCAAGAGTCCGGATACTATACTTACAA
EST: GGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGACGATATGTCA ATGAATACGTTATTTGCCTTGGGTGCAAGAGTCCGGATACTATACTTACAAEST: gi|209725552|gb|BW677854.1|BW677854
genomic: GGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGACGATATGTCAgtaagtattt ... tttttttcagATGAATACGTTATTTGCCTTGGGTGCAAGAGTCCGGATACTATACTTACAA
EST: GGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGACGATATGTCA ATGAATACGTTATTTGCCTTGGGTGCAAGAGTCCGGATACTATACTTACAAEST: gi|254337821|gb|GR849560.1|GR849560
genomic: GGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGACGATATGTCAgtaagtattt ... tttttttcagATGAATACGTTATTTGCCTTGGGTGCAAGAGTCCGGATACTATACTTACAA
EST: GGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGACGATATGTCA ATGAATACGTTATTTGCCTTGGGTGCAAGAGTCCGGATACTATACTTACAAEST: gi|213611450|gb|DB976885.1|DB976885
genomic: GGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGACGATATGTCAgtaagtattt ... tttttttcagATGAATACGTTATTTGCCTTGGGTGCAAGAGTCCGGATACTATACTTACAA
EST: GGAAGGTTTGCACCAAAGAACTTTGAAGGAAT-CAAGCGACGATATGTCA ATGAATACGTTATTTGCCTTGGGTGCAAGAGTCCGGATACTATACTTACAAEST: gi|58022083|gb|CX708824.1|CX708824
genomic: GGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCT-GCGACGATATGTCAgtaagtattt ... tttttttcagATGAATACGTTATTTGCCTTGGGTGCAAGAGTCCGGATACTATACTTACAA
EST: GGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGACGATATGTCA ATGAATACGTTATTTGCCTTGGGTGCAAGAGTCCGGATACTATACTTACAAEST: gi|8827357|gb|BE211087.1|BE211087
genomic: GGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGACGATATGTCAgtaagtattt ... tttttttcagATGAATACGTTATTTGCCTTGGGTGCAAGAGTCCGGATACTATACTTACAA
EST: GGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGACGATATGTCA ATGAATACGTTATTTGCCTTGGGTGCAAGAGTCCGGATACTATACTTACAAEST: gi|214007895|gb|DB986470.1|DB986470
genomic: GGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGACGATATGTCAgtaagtattt ... tttttttcagATGAATACGTTATTTGCCTTGGGTGCAAGAGTCCGGATACTATACTTACAA
EST: GGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGACGATATGTCA ATGAATACGTTATTTGCCTTGGGTGCAAGAGTCCGGATACTATACTTACAAEST: gi|58020605|gb|CX707347.1|CX707347
genomic: GGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGACGATATGTCAgtaagtattt ... tttttttcagATGAATACGTTATTTGCCTTGGGTGCAAGAGTCCGGATACTATACTTACAA
EST: GGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGACGATATGTCA ATGAATACGTTATTTGCCTTGGGTGCAAGAGTCCGGATACTATACTTACAAEST: gi|254337820|gb|GR849559.1|GR849559
genomic: GGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGACGATATGTCAgtaagtattt ... tttttttcagATGAATACGTTATTTGCCTTGGGTGCAAGAGTCCGGATACTATACTTACAA
EST: GGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGACGATATGTCA ATGAATACGTTATTTGCCTTGGGTGCAAGAGTCCGGATACTATACTTACAAEST: gi|16347705|gb|BI973300.1|BI973300
genomic: GGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGACGATATGTCAgtaagtattt ... tttttttcagATGAATACGTTATTTGCCTTGGGTGCAAGAGTCCGGATACTATACTTACAA
EST: GGGAAGGTTTGCACCACAGAACTTTGAAGGAATTCTGCGACGATATGTCA ATGAATACGTCATTTGCCTT
genomic: GGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGACGATATGTCAgtaagtattt ... tttttttcagATGAATACGTTATTTGCCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAATTGGGTACAAGTGGCTCCCTTGATGGACAGCAGAGATTGGTTGTAAAGGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGACGATATGTCAgtaagtatttgttttttatatttgataatctgttgtggtttcagaaataggttggaaagtatggaacagagtgagcctagcagacatgaacttcaaaaattctcccttggctattgcttttctgtctattttcgggccatcagttgaagttgatatacctctttgtttttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA